miRNA display CGI


Results 21 - 40 of 314 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28743 5' -64.9 NC_006146.1 + 127552 0.66 0.567745
Target:  5'- cCCCCUgCCacgggcugcgccuGCUggCCCUGGGCggccgAGGCCGc -3'
miRNA:   3'- -GGGGA-GG-------------UGA--GGGGCCCGga---UCCGGC- -5'
28743 5' -64.9 NC_006146.1 + 126211 0.66 0.567745
Target:  5'- gUCCCUCaucguccucCUCUCCGGGCCcGGagucacuGCCGg -3'
miRNA:   3'- -GGGGAGgu-------GAGGGGCCCGGaUC-------CGGC- -5'
28743 5' -64.9 NC_006146.1 + 106466 0.66 0.56307
Target:  5'- gCCCCUCUGuCUCCuggcagcguacgccgCCGuGGCCccGGCCu -3'
miRNA:   3'- -GGGGAGGU-GAGG---------------GGC-CCGGauCCGGc -5'
28743 5' -64.9 NC_006146.1 + 15027 0.66 0.559337
Target:  5'- aCCUUCCAgg-CCCGGGCCcccaggucucGGGCCa -3'
miRNA:   3'- gGGGAGGUgagGGGCCCGGa---------UCCGGc -5'
28743 5' -64.9 NC_006146.1 + 21183 0.66 0.559337
Target:  5'- aCCUUCCAgg-CCCGGGCCcccaggucucGGGCCa -3'
miRNA:   3'- gGGGAGGUgagGGGCCCGGa---------UCCGGc -5'
28743 5' -64.9 NC_006146.1 + 81521 0.66 0.559337
Target:  5'- uCCCCUcggugcccaCCACgagaCCUCGGGCCUcGGaaGa -3'
miRNA:   3'- -GGGGA---------GGUGa---GGGGCCCGGAuCCggC- -5'
28743 5' -64.9 NC_006146.1 + 24261 0.66 0.559337
Target:  5'- aCCUUCCAgg-CCCGGGCCcccaggucucGGGCCa -3'
miRNA:   3'- gGGGAGGUgagGGGCCCGGa---------UCCGGc -5'
28743 5' -64.9 NC_006146.1 + 46764 0.66 0.559337
Target:  5'- uCgCCUCCcgaCCCCGGGCggauggcuGGCCGg -3'
miRNA:   3'- -GgGGAGGugaGGGGCCCGgau-----CCGGC- -5'
28743 5' -64.9 NC_006146.1 + 105828 0.66 0.559337
Target:  5'- gCCCCUCCug-CCCCGcGCC---GCCGa -3'
miRNA:   3'- -GGGGAGGugaGGGGCcCGGaucCGGC- -5'
28743 5' -64.9 NC_006146.1 + 27339 0.66 0.559337
Target:  5'- aCCUUCCAgg-CCCGGGCCcccaggucucGGGCCa -3'
miRNA:   3'- gGGGAGGUgagGGGCCCGGa---------UCCGGc -5'
28743 5' -64.9 NC_006146.1 + 18105 0.66 0.559337
Target:  5'- aCCUUCCAgg-CCCGGGCCcccaggucucGGGCCa -3'
miRNA:   3'- gGGGAGGUgagGGGCCCGGa---------UCCGGc -5'
28743 5' -64.9 NC_006146.1 + 10803 0.66 0.559337
Target:  5'- aUCCUCCACUagaggccgCCCaUGGGCCaugagaUAGGCUc -3'
miRNA:   3'- gGGGAGGUGA--------GGG-GCCCGG------AUCCGGc -5'
28743 5' -64.9 NC_006146.1 + 157824 0.66 0.559337
Target:  5'- aCUCCUCCGCgcuggCCCCggaggggacGGGCaccgAGcGCCGc -3'
miRNA:   3'- -GGGGAGGUGa----GGGG---------CCCGga--UC-CGGC- -5'
28743 5' -64.9 NC_006146.1 + 138853 0.66 0.559337
Target:  5'- gCUCgCCACg-CCCGGGucaugaCCUGGGCCa -3'
miRNA:   3'- gGGGaGGUGagGGGCCC------GGAUCCGGc -5'
28743 5' -64.9 NC_006146.1 + 27756 0.66 0.553751
Target:  5'- -nCCUCCGCgUCCCCguccuccagagucacGGGCUacAGGCCc -3'
miRNA:   3'- ggGGAGGUG-AGGGG---------------CCCGGa-UCCGGc -5'
28743 5' -64.9 NC_006146.1 + 24678 0.66 0.553751
Target:  5'- -nCCUCCGCgUCCCCguccuccagagucacGGGCUacAGGCCc -3'
miRNA:   3'- ggGGAGGUG-AGGGG---------------CCCGGa-UCCGGc -5'
28743 5' -64.9 NC_006146.1 + 18522 0.66 0.553751
Target:  5'- -nCCUCCGCgUCCCCguccuccagagucacGGGCUacAGGCCc -3'
miRNA:   3'- ggGGAGGUG-AGGGG---------------CCCGGa-UCCGGc -5'
28743 5' -64.9 NC_006146.1 + 21600 0.66 0.553751
Target:  5'- -nCCUCCGCgUCCCCguccuccagagucacGGGCUacAGGCCc -3'
miRNA:   3'- ggGGAGGUG-AGGGG---------------CCCGGa-UCCGGc -5'
28743 5' -64.9 NC_006146.1 + 12365 0.66 0.553751
Target:  5'- -nCCUCCGCgUCCCCguccuccagagucacGGGCUacAGGCCc -3'
miRNA:   3'- ggGGAGGUG-AGGGG---------------CCCGGa-UCCGGc -5'
28743 5' -64.9 NC_006146.1 + 15444 0.66 0.553751
Target:  5'- -nCCUCCGCgUCCCCguccuccagagucacGGGCUacAGGCCc -3'
miRNA:   3'- ggGGAGGUG-AGGGG---------------CCCGGa-UCCGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.