Results 61 - 80 of 314 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28743 | 5' | -64.9 | NC_006146.1 | + | 115101 | 0.67 | 0.522441 |
Target: 5'- cCUCUUCCACcgCCCCGaGUCgcuGGCCa -3' miRNA: 3'- -GGGGAGGUGa-GGGGCcCGGau-CCGGc -5' |
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28743 | 5' | -64.9 | NC_006146.1 | + | 163784 | 0.67 | 0.522441 |
Target: 5'- aUCCUCUaguuaguauGCagCCUGGGCCUuggcGGGCCa -3' miRNA: 3'- gGGGAGG---------UGagGGGCCCGGA----UCCGGc -5' |
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28743 | 5' | -64.9 | NC_006146.1 | + | 81213 | 0.67 | 0.522441 |
Target: 5'- aUCCCaggCCGUUCCCCGGGCCccuuccGUCGg -3' miRNA: 3'- -GGGGa--GGUGAGGGGCCCGGauc---CGGC- -5' |
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28743 | 5' | -64.9 | NC_006146.1 | + | 27597 | 0.67 | 0.52153 |
Target: 5'- gCCUUCCaagacagACUCUCCGGGUCcacuggguGGCCa -3' miRNA: 3'- gGGGAGG-------UGAGGGGCCCGGau------CCGGc -5' |
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28743 | 5' | -64.9 | NC_006146.1 | + | 18843 | 0.67 | 0.51336 |
Target: 5'- -gCUUCCAgaCCCCGGGCgCU--GCCGg -3' miRNA: 3'- ggGGAGGUgaGGGGCCCG-GAucCGGC- -5' |
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28743 | 5' | -64.9 | NC_006146.1 | + | 123643 | 0.67 | 0.51336 |
Target: 5'- -aCCUCguCa-CCCGGGCCagGGGCCa -3' miRNA: 3'- ggGGAGguGagGGGCCCGGa-UCCGGc -5' |
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28743 | 5' | -64.9 | NC_006146.1 | + | 101280 | 0.67 | 0.51336 |
Target: 5'- gCCC-CCAgUaCCCCGGGgaCgUGGGCCu -3' miRNA: 3'- gGGGaGGUgA-GGGGCCC--GgAUCCGGc -5' |
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28743 | 5' | -64.9 | NC_006146.1 | + | 14197 | 0.67 | 0.51336 |
Target: 5'- cCCCCUuuGC-CCCCuGGC--AGGCCa -3' miRNA: 3'- -GGGGAggUGaGGGGcCCGgaUCCGGc -5' |
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28743 | 5' | -64.9 | NC_006146.1 | + | 23431 | 0.67 | 0.51336 |
Target: 5'- cCCCCUuuGC-CCCCuGGC--AGGCCa -3' miRNA: 3'- -GGGGAggUGaGGGGcCCGgaUCCGGc -5' |
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28743 | 5' | -64.9 | NC_006146.1 | + | 17275 | 0.67 | 0.51336 |
Target: 5'- cCCCCUuuGC-CCCCuGGC--AGGCCa -3' miRNA: 3'- -GGGGAggUGaGGGGcCCGgaUCCGGc -5' |
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28743 | 5' | -64.9 | NC_006146.1 | + | 26509 | 0.67 | 0.51336 |
Target: 5'- cCCCCUuuGC-CCCCuGGC--AGGCCa -3' miRNA: 3'- -GGGGAggUGaGGGGcCCGgaUCCGGc -5' |
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28743 | 5' | -64.9 | NC_006146.1 | + | 20353 | 0.67 | 0.51336 |
Target: 5'- cCCCCUuuGC-CCCCuGGC--AGGCCa -3' miRNA: 3'- -GGGGAggUGaGGGGcCCGgaUCCGGc -5' |
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28743 | 5' | -64.9 | NC_006146.1 | + | 29587 | 0.67 | 0.51336 |
Target: 5'- cCCCCUuuGC-CCCCuGGC--AGGCCa -3' miRNA: 3'- -GGGGAggUGaGGGGcCCGgaUCCGGc -5' |
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28743 | 5' | -64.9 | NC_006146.1 | + | 135341 | 0.67 | 0.510648 |
Target: 5'- gCCgggUCCGCUgCCCgguccuggagcucgGGGCCggGGGCCGg -3' miRNA: 3'- gGGg--AGGUGAgGGG--------------CCCGGa-UCCGGC- -5' |
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28743 | 5' | -64.9 | NC_006146.1 | + | 136363 | 0.67 | 0.510648 |
Target: 5'- gCCgggUCCGCUgCCCgguccuggagcucgGGGCCggGGGCCGg -3' miRNA: 3'- gGGg--AGGUGAgGGG--------------CCCGGa-UCCGGC- -5' |
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28743 | 5' | -64.9 | NC_006146.1 | + | 136549 | 0.67 | 0.510648 |
Target: 5'- gCCgggUCCGCUgCCCgguccuggagcucgGGGCCggGGGCCGg -3' miRNA: 3'- gGGg--AGGUGAgGGG--------------CCCGGa-UCCGGC- -5' |
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28743 | 5' | -64.9 | NC_006146.1 | + | 137013 | 0.67 | 0.510648 |
Target: 5'- gCCgggUCCGCUgCCCgguccuggagcucgGGGCCggGGGCCGg -3' miRNA: 3'- gGGg--AGGUGAgGGG--------------CCCGGa-UCCGGC- -5' |
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28743 | 5' | -64.9 | NC_006146.1 | + | 136456 | 0.67 | 0.510648 |
Target: 5'- gCCgggUCCGCUgCCCgguccuggagcucgGGGCCggGGGCCGg -3' miRNA: 3'- gGGg--AGGUGAgGGG--------------CCCGGa-UCCGGC- -5' |
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28743 | 5' | -64.9 | NC_006146.1 | + | 135620 | 0.67 | 0.510648 |
Target: 5'- gCCgggUCCGCUgCCCgguccuggagcucgGGGCCggGGGCCGg -3' miRNA: 3'- gGGg--AGGUGAgGGG--------------CCCGGa-UCCGGC- -5' |
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28743 | 5' | -64.9 | NC_006146.1 | + | 136270 | 0.67 | 0.510648 |
Target: 5'- gCCgggUCCGCUgCCCgguccuggagcucgGGGCCggGGGCCGg -3' miRNA: 3'- gGGg--AGGUGAgGGG--------------CCCGGa-UCCGGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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