miRNA display CGI


Results 1 - 20 of 85 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28744 3' -56.9 NC_006146.1 + 33998 0.75 0.393098
Target:  5'- cGGuGCACCUggaaggcagggggggGgUCGGGGCAGGCggGCg -3'
miRNA:   3'- uCC-CGUGGA---------------UgAGCUCCGUCCGaaUG- -5'
28744 3' -56.9 NC_006146.1 + 40741 0.69 0.729661
Target:  5'- cGGGC-CCgUGCUUGGGGCuGGCcacggACg -3'
miRNA:   3'- uCCCGuGG-AUGAGCUCCGuCCGaa---UG- -5'
28744 3' -56.9 NC_006146.1 + 39276 0.68 0.749163
Target:  5'- uGGGCcCCggACUCGAgacGGCAGGUggcaGCa -3'
miRNA:   3'- uCCCGuGGa-UGAGCU---CCGUCCGaa--UG- -5'
28744 3' -56.9 NC_006146.1 + 51738 0.66 0.884525
Target:  5'- aGGcGGCGCCc---CGAGGUGGGCUucuugUGCg -3'
miRNA:   3'- -UC-CCGUGGaugaGCUCCGUCCGA-----AUG- -5'
28744 3' -56.9 NC_006146.1 + 22086 0.72 0.537396
Target:  5'- aGGaGGCGCCUGggCGAGGCuggguGGCUggGCa -3'
miRNA:   3'- -UC-CCGUGGAUgaGCUCCGu----CCGAa-UG- -5'
28744 3' -56.9 NC_006146.1 + 25164 0.72 0.537396
Target:  5'- aGGaGGCGCCUGggCGAGGCuggguGGCUggGCa -3'
miRNA:   3'- -UC-CCGUGGAUgaGCUCCGu----CCGAa-UG- -5'
28744 3' -56.9 NC_006146.1 + 139168 0.72 0.567429
Target:  5'- gGGGGCGCCUG--UGAGGC-GGCUg-- -3'
miRNA:   3'- -UCCCGUGGAUgaGCUCCGuCCGAaug -5'
28744 3' -56.9 NC_006146.1 + 68157 0.71 0.618301
Target:  5'- aGGGGCuGCCUcCUCcccGGGCAGGCgcaGCg -3'
miRNA:   3'- -UCCCG-UGGAuGAGc--UCCGUCCGaa-UG- -5'
28744 3' -56.9 NC_006146.1 + 19361 0.7 0.638774
Target:  5'- cGGGCGCCUcCUCGGguucagccgcuGGCuGGCUcUGCc -3'
miRNA:   3'- uCCCGUGGAuGAGCU-----------CCGuCCGA-AUG- -5'
28744 3' -56.9 NC_006146.1 + 47078 0.7 0.659226
Target:  5'- gGGGGCGCCUgACgaaGAcGGUGGGC-UGCg -3'
miRNA:   3'- -UCCCGUGGA-UGag-CU-CCGUCCGaAUG- -5'
28744 3' -56.9 NC_006146.1 + 25517 0.7 0.638774
Target:  5'- cGGGCGCCUcCUCGGguucagccgcuGGCuGGCUcUGCc -3'
miRNA:   3'- uCCCGUGGAuGAGCU-----------CCGuCCGA-AUG- -5'
28744 3' -56.9 NC_006146.1 + 16283 0.7 0.638774
Target:  5'- cGGGCGCCUcCUCGGguucagccgcuGGCuGGCUcUGCc -3'
miRNA:   3'- uCCCGUGGAuGAGCU-----------CCGuCCGA-AUG- -5'
28744 3' -56.9 NC_006146.1 + 137828 0.74 0.441214
Target:  5'- cGGuGCACCUggaaggcagggggGCUCGGGGUGGGUggGCg -3'
miRNA:   3'- uCC-CGUGGA-------------UGAGCUCCGUCCGaaUG- -5'
28744 3' -56.9 NC_006146.1 + 28595 0.7 0.638774
Target:  5'- cGGGCGCCUcCUCGGguucagccgcuGGCuGGCUcUGCc -3'
miRNA:   3'- uCCCGUGGAuGAGCU-----------CCGuCCGA-AUG- -5'
28744 3' -56.9 NC_006146.1 + 15931 0.72 0.537396
Target:  5'- aGGaGGCGCCUGggCGAGGCuggguGGCUggGCa -3'
miRNA:   3'- -UC-CCGUGGAUgaGCUCCGu----CCGAa-UG- -5'
28744 3' -56.9 NC_006146.1 + 13205 0.7 0.638774
Target:  5'- cGGGCGCCUcCUCGGguucagccgcuGGCuGGCUcUGCc -3'
miRNA:   3'- uCCCGUGGAuGAGCU-----------CCGuCCGA-AUG- -5'
28744 3' -56.9 NC_006146.1 + 12852 0.7 0.659226
Target:  5'- aGGaGGCGCCUGgggCGAGGCuggguGGCUggGCa -3'
miRNA:   3'- -UC-CCGUGGAUga-GCUCCGu----CCGAa-UG- -5'
28744 3' -56.9 NC_006146.1 + 72564 0.69 0.729661
Target:  5'- uGGGCGCCgg--CGuGGUgcugGGGCUUGCc -3'
miRNA:   3'- uCCCGUGGaugaGCuCCG----UCCGAAUG- -5'
28744 3' -56.9 NC_006146.1 + 19008 0.72 0.537396
Target:  5'- aGGaGGCGCCUGggCGAGGCuggguGGCUggGCa -3'
miRNA:   3'- -UC-CCGUGGAUgaGCUCCGu----CCGAa-UG- -5'
28744 3' -56.9 NC_006146.1 + 28242 0.72 0.537396
Target:  5'- aGGaGGCGCCUGggCGAGGCuggguGGCUggGCa -3'
miRNA:   3'- -UC-CCGUGGAUgaGCUCCGu----CCGAa-UG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.