miRNA display CGI


Results 1 - 20 of 134 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28744 5' -59.9 NC_006146.1 + 159521 0.66 0.77669
Target:  5'- gGGgccaauGGCCucgaguuuuuucauuGGCCCGAGGGcuUCGCUc -3'
miRNA:   3'- aCCau----UCGGu--------------CCGGGCUCCC--AGUGGa -5'
28744 5' -59.9 NC_006146.1 + 44777 0.66 0.738566
Target:  5'- gGGUGccguGCCGGGCUCaGGGGGgCGCa- -3'
miRNA:   3'- aCCAUu---CGGUCCGGG-CUCCCaGUGga -5'
28744 5' -59.9 NC_006146.1 + 3814 0.66 0.72902
Target:  5'- aGGUcuGGGUCAGGCCaggcGGGG-CACCc -3'
miRNA:   3'- aCCA--UUCGGUCCGGgc--UCCCaGUGGa -5'
28744 5' -59.9 NC_006146.1 + 28372 0.66 0.775783
Target:  5'- aGaGUcGGCCuAGGCCCGgggaguggagGGGGaUCGCCc -3'
miRNA:   3'- aC-CAuUCGG-UCCGGGC----------UCCC-AGUGGa -5'
28744 5' -59.9 NC_006146.1 + 34405 0.66 0.72902
Target:  5'- aGGUGuGUCAuuuuaGCCCGuuGGGUUACCUg -3'
miRNA:   3'- aCCAUuCGGUc----CGGGCu-CCCAGUGGA- -5'
28744 5' -59.9 NC_006146.1 + 79618 0.66 0.72902
Target:  5'- cGGUGAGCUcGuCCCGgggacAGGGUCACa- -3'
miRNA:   3'- aCCAUUCGGuCcGGGC-----UCCCAGUGga -5'
28744 5' -59.9 NC_006146.1 + 138235 0.66 0.72902
Target:  5'- aGGUGuGUCAuuuuaGCCCGuuGGGUUACCUg -3'
miRNA:   3'- aCCAUuCGGUc----CGGGCu-CCCAGUGGA- -5'
28744 5' -59.9 NC_006146.1 + 155789 0.66 0.72902
Target:  5'- ---aGAGCCGcucgguGGCCCuGGGGGcCACCg -3'
miRNA:   3'- accaUUCGGU------CCGGG-CUCCCaGUGGa -5'
28744 5' -59.9 NC_006146.1 + 168657 0.66 0.737615
Target:  5'- cGcGUcGGUgGGGCCUGAGGGggcgcggcgauugUCGCCg -3'
miRNA:   3'- aC-CAuUCGgUCCGGGCUCCC-------------AGUGGa -5'
28744 5' -59.9 NC_006146.1 + 129245 0.66 0.738566
Target:  5'- cGGgcccAGGUgAGGCgCGAGGGUCAg-- -3'
miRNA:   3'- aCCa---UUCGgUCCGgGCUCCCAGUgga -5'
28744 5' -59.9 NC_006146.1 + 128815 0.66 0.748023
Target:  5'- aGGgagGGGCgGcGGCagaGGGGGUCACCc -3'
miRNA:   3'- aCCa--UUCGgU-CCGgg-CUCCCAGUGGa -5'
28744 5' -59.9 NC_006146.1 + 94972 0.66 0.748023
Target:  5'- cUGGUAuaaagacccacuGGCCAGGCauGGGGGgCAgCUg -3'
miRNA:   3'- -ACCAU------------UCGGUCCGggCUCCCaGUgGA- -5'
28744 5' -59.9 NC_006146.1 + 91997 0.66 0.775783
Target:  5'- cUGGcGGGCCcGGCCUGGGGcugCugCUg -3'
miRNA:   3'- -ACCaUUCGGuCCGGGCUCCca-GugGA- -5'
28744 5' -59.9 NC_006146.1 + 52992 0.66 0.76664
Target:  5'- cGGaccugccGGCCGuGGCCgCGGGGGUCgaugACCa -3'
miRNA:   3'- aCCau-----UCGGU-CCGG-GCUCCCAG----UGGa -5'
28744 5' -59.9 NC_006146.1 + 61524 0.66 0.76664
Target:  5'- aGGgaGGCCuccGGuGUCCGGGGGaCGCCc -3'
miRNA:   3'- aCCauUCGG---UC-CGGGCUCCCaGUGGa -5'
28744 5' -59.9 NC_006146.1 + 51571 0.66 0.757384
Target:  5'- cUGGgc-GCCgccgggagGGGCCCGGGGGa-GCCa -3'
miRNA:   3'- -ACCauuCGG--------UCCGGGCUCCCagUGGa -5'
28744 5' -59.9 NC_006146.1 + 55816 0.66 0.757384
Target:  5'- aUGaGUAcAGCCAGcGCCUGGGuGGgCACCc -3'
miRNA:   3'- -AC-CAU-UCGGUC-CGGGCUC-CCaGUGGa -5'
28744 5' -59.9 NC_006146.1 + 88812 0.66 0.748023
Target:  5'- cUGGgcauguuuGGCUGGGCCUGAGGcUC-CCUg -3'
miRNA:   3'- -ACCau------UCGGUCCGGGCUCCcAGuGGA- -5'
28744 5' -59.9 NC_006146.1 + 166364 0.66 0.748023
Target:  5'- aGGUAGucggcggcuGCC-GGCaCCGAGauGGUCACCc -3'
miRNA:   3'- aCCAUU---------CGGuCCG-GGCUC--CCAGUGGa -5'
28744 5' -59.9 NC_006146.1 + 117979 0.66 0.748023
Target:  5'- cGGacgAGGCCAGcGCCCccgGGGGGcCACg- -3'
miRNA:   3'- aCCa--UUCGGUC-CGGG---CUCCCaGUGga -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.