Results 121 - 122 of 122 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
28745 | 3' | -57.5 | NC_006146.1 | + | 118975 | 0.66 | 0.873246 |
Target: 5'- aCCgca--CCGGGGCCGCCcgUcgGUGCc -3' miRNA: 3'- aGGacccaGGUCCCGGCGGuaA--UACG- -5' |
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28745 | 3' | -57.5 | NC_006146.1 | + | 145707 | 0.66 | 0.880324 |
Target: 5'- gCCUGGGagCAGGaGCgCGUCAgcuugAUGUc -3' miRNA: 3'- aGGACCCagGUCC-CG-GCGGUaa---UACG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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