miRNA display CGI


Results 61 - 80 of 122 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28745 3' -57.5 NC_006146.1 + 136008 0.68 0.782898
Target:  5'- gUCCUGGaGcUCGGGGCCggggGCCgg-GUGCc -3'
miRNA:   3'- -AGGACC-CaGGUCCCGG----CGGuaaUACG- -5'
28745 3' -57.5 NC_006146.1 + 136101 0.68 0.782898
Target:  5'- gUCCUGGaGcUCGGGGCCggggGCCgg-GUGCc -3'
miRNA:   3'- -AGGACC-CaGGUCCCGG----CGGuaaUACG- -5'
28745 3' -57.5 NC_006146.1 + 136194 0.68 0.782898
Target:  5'- gUCCUGGaGcUCGGGGCCggggGCCgg-GUGCc -3'
miRNA:   3'- -AGGACC-CaGGUCCCGG----CGGuaaUACG- -5'
28745 3' -57.5 NC_006146.1 + 136287 0.68 0.782898
Target:  5'- gUCCUGGaGcUCGGGGCCggggGCCgg-GUGCc -3'
miRNA:   3'- -AGGACC-CaGGUCCCGG----CGGuaaUACG- -5'
28745 3' -57.5 NC_006146.1 + 136380 0.68 0.782898
Target:  5'- gUCCUGGaGcUCGGGGCCggggGCCgg-GUGCc -3'
miRNA:   3'- -AGGACC-CaGGUCCCGG----CGGuaaUACG- -5'
28745 3' -57.5 NC_006146.1 + 136473 0.68 0.782898
Target:  5'- gUCCUGGaGcUCGGGGCCggggGCCgg-GUGCc -3'
miRNA:   3'- -AGGACC-CaGGUCCCGG----CGGuaaUACG- -5'
28745 3' -57.5 NC_006146.1 + 136566 0.68 0.782898
Target:  5'- gUCCUGGaGcUCGGGGCCggggGCCgg-GUGCc -3'
miRNA:   3'- -AGGACC-CaGGUCCCGG----CGGuaaUACG- -5'
28745 3' -57.5 NC_006146.1 + 136659 0.68 0.782898
Target:  5'- gUCCUGGaGcUCGGGGCCggggGCCgg-GUGCc -3'
miRNA:   3'- -AGGACC-CaGGUCCCGG----CGGuaaUACG- -5'
28745 3' -57.5 NC_006146.1 + 136751 0.68 0.782898
Target:  5'- gUCCUGGaGcUCGGGGCCggggGCCgg-GUGCc -3'
miRNA:   3'- -AGGACC-CaGGUCCCGG----CGGuaaUACG- -5'
28745 3' -57.5 NC_006146.1 + 136844 0.68 0.782898
Target:  5'- gUCCUGGaGcUCGGGGCCggggGCCgg-GUGCc -3'
miRNA:   3'- -AGGACC-CaGGUCCCGG----CGGuaaUACG- -5'
28745 3' -57.5 NC_006146.1 + 136937 0.68 0.782898
Target:  5'- gUCCUGGaGcUCGGGGCCggggGCCgg-GUGCc -3'
miRNA:   3'- -AGGACC-CaGGUCCCGG----CGGuaaUACG- -5'
28745 3' -57.5 NC_006146.1 + 137030 0.68 0.782898
Target:  5'- gUCCUGGaGcUCGGGGCCggggGCCgg-GUGCc -3'
miRNA:   3'- -AGGACC-CaGGUCCCGG----CGGuaaUACG- -5'
28745 3' -57.5 NC_006146.1 + 137123 0.68 0.782898
Target:  5'- gUCCUGGaGcUCGGGGCCggggGCCgg-GUGCc -3'
miRNA:   3'- -AGGACC-CaGGUCCCGG----CGGuaaUACG- -5'
28745 3' -57.5 NC_006146.1 + 137216 0.68 0.782898
Target:  5'- gUCCUGGaGcUCGGGGCCggggGCCgg-GUGCc -3'
miRNA:   3'- -AGGACC-CaGGUCCCGG----CGGuaaUACG- -5'
28745 3' -57.5 NC_006146.1 + 137309 0.68 0.782898
Target:  5'- gUCCUGGaGcUCGGGGCCggggGCCgg-GUGCc -3'
miRNA:   3'- -AGGACC-CaGGUCCCGG----CGGuaaUACG- -5'
28745 3' -57.5 NC_006146.1 + 137402 0.68 0.782898
Target:  5'- gUCCUGGaGcUCGGGGCCggggGCCgg-GUGCc -3'
miRNA:   3'- -AGGACC-CaGGUCCCGG----CGGuaaUACG- -5'
28745 3' -57.5 NC_006146.1 + 137495 0.68 0.782898
Target:  5'- gUCCUGGaGcUCGGGGCCggggGCCgg-GUGCc -3'
miRNA:   3'- -AGGACC-CaGGUCCCGG----CGGuaaUACG- -5'
28745 3' -57.5 NC_006146.1 + 137790 0.68 0.777416
Target:  5'- gCCU-GGUCCgccggauccgcuucgGGGGuCCGCCGguccgGUGCa -3'
miRNA:   3'- aGGAcCCAGG---------------UCCC-GGCGGUaa---UACG- -5'
28745 3' -57.5 NC_006146.1 + 142055 0.66 0.873246
Target:  5'- cUCUGGGgCCAcccGGGCUGCCGgg--GUc -3'
miRNA:   3'- aGGACCCaGGU---CCCGGCGGUaauaCG- -5'
28745 3' -57.5 NC_006146.1 + 142370 0.66 0.865958
Target:  5'- gCCUGGGaggUCCGGGGUguugaGCCugc-UGCc -3'
miRNA:   3'- aGGACCC---AGGUCCCGg----CGGuaauACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.