Results 61 - 80 of 122 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28745 | 3' | -57.5 | NC_006146.1 | + | 135729 | 0.68 | 0.782898 |
Target: 5'- gUCCUGGaGcUCGGGGCCggggGCCgg-GUGCc -3' miRNA: 3'- -AGGACC-CaGGUCCCGG----CGGuaaUACG- -5' |
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28745 | 3' | -57.5 | NC_006146.1 | + | 135915 | 0.68 | 0.782898 |
Target: 5'- gUCCUGGaGcUCGGGGCCggggGCCgg-GUGCc -3' miRNA: 3'- -AGGACC-CaGGUCCCGG----CGGuaaUACG- -5' |
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28745 | 3' | -57.5 | NC_006146.1 | + | 136008 | 0.68 | 0.782898 |
Target: 5'- gUCCUGGaGcUCGGGGCCggggGCCgg-GUGCc -3' miRNA: 3'- -AGGACC-CaGGUCCCGG----CGGuaaUACG- -5' |
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28745 | 3' | -57.5 | NC_006146.1 | + | 135822 | 0.68 | 0.782898 |
Target: 5'- gUCCUGGaGcUCGGGGCCggggGCCgg-GUGCc -3' miRNA: 3'- -AGGACC-CaGGUCCCGG----CGGuaaUACG- -5' |
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28745 | 3' | -57.5 | NC_006146.1 | + | 136287 | 0.68 | 0.782898 |
Target: 5'- gUCCUGGaGcUCGGGGCCggggGCCgg-GUGCc -3' miRNA: 3'- -AGGACC-CaGGUCCCGG----CGGuaaUACG- -5' |
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28745 | 3' | -57.5 | NC_006146.1 | + | 151289 | 0.66 | 0.873246 |
Target: 5'- cUCUGGGgCCAcccGGGCUGCCGgg--GUc -3' miRNA: 3'- aGGACCCaGGU---CCCGGCGGUaauaCG- -5' |
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28745 | 3' | -57.5 | NC_006146.1 | + | 76256 | 0.67 | 0.80082 |
Target: 5'- uUCgUGGuccCCAGGGCgGCCAUcAUGg -3' miRNA: 3'- -AGgACCca-GGUCCCGgCGGUAaUACg -5' |
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28745 | 3' | -57.5 | NC_006146.1 | + | 42839 | 0.67 | 0.80082 |
Target: 5'- aUCaGGGccUCgAGGGCCGCCAg---GCc -3' miRNA: 3'- aGGaCCC--AGgUCCCGGCGGUaauaCG- -5' |
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28745 | 3' | -57.5 | NC_006146.1 | + | 116659 | 0.67 | 0.809563 |
Target: 5'- gCCUGa--CCGGGGCCGCCcagagGCu -3' miRNA: 3'- aGGACccaGGUCCCGGCGGuaauaCG- -5' |
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28745 | 3' | -57.5 | NC_006146.1 | + | 8516 | 0.67 | 0.818149 |
Target: 5'- aCCgGGGUCCcgggcgcGGGCgCGCCAagggGCu -3' miRNA: 3'- aGGaCCCAGGu------CCCG-GCGGUaauaCG- -5' |
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28745 | 3' | -57.5 | NC_006146.1 | + | 157759 | 0.66 | 0.865958 |
Target: 5'- gCCUGGGaggUCCGGGGUguugaGCCugc-UGCc -3' miRNA: 3'- aGGACCC---AGGUCCCGg----CGGuaauACG- -5' |
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28745 | 3' | -57.5 | NC_006146.1 | + | 147119 | 1.12 | 0.001322 |
Target: 5'- uUCCUGGGUCCAGGGCCGCCAUUAUGCg -3' miRNA: 3'- -AGGACCCAGGUCCCGGCGGUAAUACG- -5' |
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28745 | 3' | -57.5 | NC_006146.1 | + | 153275 | 1.12 | 0.001322 |
Target: 5'- uUCCUGGGUCCAGGGCCGCCAUUAUGCg -3' miRNA: 3'- -AGGACCCAGGUCCCGGCGGUAAUACG- -5' |
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28745 | 3' | -57.5 | NC_006146.1 | + | 156353 | 1.12 | 0.001322 |
Target: 5'- uUCCUGGGUCCAGGGCCGCCAUUAUGCg -3' miRNA: 3'- -AGGACCCAGGUCCCGGCGGUAAUACG- -5' |
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28745 | 3' | -57.5 | NC_006146.1 | + | 142681 | 0.73 | 0.488597 |
Target: 5'- cUCCUcGGGUCC--GGCCGCCGgaggGCu -3' miRNA: 3'- -AGGA-CCCAGGucCCGGCGGUaauaCG- -5' |
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28745 | 3' | -57.5 | NC_006146.1 | + | 115832 | 0.68 | 0.764449 |
Target: 5'- gUCCcugcugUGGGUCCGauacGGCCGCCugug-GCa -3' miRNA: 3'- -AGG------ACCCAGGUc---CCGGCGGuaauaCG- -5' |
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28745 | 3' | -57.5 | NC_006146.1 | + | 150197 | 1.12 | 0.001322 |
Target: 5'- uUCCUGGGUCCAGGGCCGCCAUUAUGCg -3' miRNA: 3'- -AGGACCCAGGUCCCGGCGGUAAUACG- -5' |
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28745 | 3' | -57.5 | NC_006146.1 | + | 42623 | 0.67 | 0.82657 |
Target: 5'- gCCUGGGgCUcGGccGCCGCCGUgg-GCc -3' miRNA: 3'- aGGACCCaGGuCC--CGGCGGUAauaCG- -5' |
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28745 | 3' | -57.5 | NC_006146.1 | + | 148526 | 0.66 | 0.865958 |
Target: 5'- gCCUGGGaggUCCGGGGUguugaGCCugc-UGCc -3' miRNA: 3'- aGGACCC---AGGUCCCGg----CGGuaauACG- -5' |
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28745 | 3' | -57.5 | NC_006146.1 | + | 151604 | 0.66 | 0.865958 |
Target: 5'- gCCUGGGaggUCCGGGGUguugaGCCugc-UGCc -3' miRNA: 3'- aGGACCC---AGGUCCCGg----CGGuaauACG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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