miRNA display CGI


Results 101 - 120 of 122 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28745 3' -57.5 NC_006146.1 + 142681 0.73 0.488597
Target:  5'- cUCCUcGGGUCC--GGCCGCCGgaggGCu -3'
miRNA:   3'- -AGGA-CCCAGGucCCGGCGGUaauaCG- -5'
28745 3' -57.5 NC_006146.1 + 156353 1.12 0.001322
Target:  5'- uUCCUGGGUCCAGGGCCGCCAUUAUGCg -3'
miRNA:   3'- -AGGACCCAGGUCCCGGCGGUAAUACG- -5'
28745 3' -57.5 NC_006146.1 + 153275 1.12 0.001322
Target:  5'- uUCCUGGGUCCAGGGCCGCCAUUAUGCg -3'
miRNA:   3'- -AGGACCCAGGUCCCGGCGGUAAUACG- -5'
28745 3' -57.5 NC_006146.1 + 150197 1.12 0.001322
Target:  5'- uUCCUGGGUCCAGGGCCGCCAUUAUGCg -3'
miRNA:   3'- -AGGACCCAGGUCCCGGCGGUAAUACG- -5'
28745 3' -57.5 NC_006146.1 + 147119 1.12 0.001322
Target:  5'- uUCCUGGGUCCAGGGCCGCCAUUAUGCg -3'
miRNA:   3'- -AGGACCCAGGUCCCGGCGGUAAUACG- -5'
28745 3' -57.5 NC_006146.1 + 1148 0.71 0.606269
Target:  5'- cCCgcgaGGGUCCccGGGCCGCCccgggGCu -3'
miRNA:   3'- aGGa---CCCAGGu-CCCGGCGGuaauaCG- -5'
28745 3' -57.5 NC_006146.1 + 2080 0.71 0.606269
Target:  5'- cCCgcgaGGGUCCccGGGCCGCCccgggGCu -3'
miRNA:   3'- aGGa---CCCAGGu-CCCGGCGGuaauaCG- -5'
28745 3' -57.5 NC_006146.1 + 3012 0.71 0.606269
Target:  5'- cCCgcgaGGGUCCccGGGCCGCCccgggGCu -3'
miRNA:   3'- aGGa---CCCAGGu-CCCGGCGGuaauaCG- -5'
28745 3' -57.5 NC_006146.1 + 76256 0.67 0.80082
Target:  5'- uUCgUGGuccCCAGGGCgGCCAUcAUGg -3'
miRNA:   3'- -AGgACCca-GGUCCCGgCGGUAaUACg -5'
28745 3' -57.5 NC_006146.1 + 115832 0.68 0.764449
Target:  5'- gUCCcugcugUGGGUCCGauacGGCCGCCugug-GCa -3'
miRNA:   3'- -AGG------ACCCAGGUc---CCGGCGGuaauaCG- -5'
28745 3' -57.5 NC_006146.1 + 110007 0.69 0.716482
Target:  5'- cUCCUGGaUCCAcuGGGCCccagGCCGgucUGCa -3'
miRNA:   3'- -AGGACCcAGGU--CCCGG----CGGUaauACG- -5'
28745 3' -57.5 NC_006146.1 + 157971 0.69 0.706643
Target:  5'- aCCgggcgGGG-CCAGGGCCuCCAgag-GCa -3'
miRNA:   3'- aGGa----CCCaGGUCCCGGcGGUaauaCG- -5'
28745 3' -57.5 NC_006146.1 + 154893 0.69 0.706643
Target:  5'- aCCgggcgGGG-CCAGGGCCuCCAgag-GCa -3'
miRNA:   3'- aGGa----CCCaGGUCCCGGcGGUaauaCG- -5'
28745 3' -57.5 NC_006146.1 + 151815 0.69 0.706643
Target:  5'- aCCgggcgGGG-CCAGGGCCuCCAgag-GCa -3'
miRNA:   3'- aGGa----CCCaGGUCCCGGcGGUaauaCG- -5'
28745 3' -57.5 NC_006146.1 + 148737 0.69 0.706643
Target:  5'- aCCgggcgGGG-CCAGGGCCuCCAgag-GCa -3'
miRNA:   3'- aGGa----CCCaGGUCCCGGcGGUaauaCG- -5'
28745 3' -57.5 NC_006146.1 + 145660 0.69 0.706643
Target:  5'- aCCgggcgGGG-CCAGGGCCuCCAgag-GCa -3'
miRNA:   3'- aGGa----CCCaGGUCCCGGcGGUaauaCG- -5'
28745 3' -57.5 NC_006146.1 + 142582 0.69 0.706643
Target:  5'- aCCgggcgGGG-CCAGGGCCuCCAgag-GCa -3'
miRNA:   3'- aGGa----CCCaGGUCCCGGcGGUaauaCG- -5'
28745 3' -57.5 NC_006146.1 + 26286 0.7 0.676792
Target:  5'- gCCUGGGUggaGGGGCCGgCAUcUGgagGCg -3'
miRNA:   3'- aGGACCCAgg-UCCCGGCgGUA-AUa--CG- -5'
28745 3' -57.5 NC_006146.1 + 14838 0.7 0.63653
Target:  5'- gUCUcGGGcCCGGGGCCGCgGgag-GCc -3'
miRNA:   3'- -AGGaCCCaGGUCCCGGCGgUaauaCG- -5'
28745 3' -57.5 NC_006146.1 + 24219 0.71 0.616347
Target:  5'- uUCUguUGGGgCCGGGGCCGCCcacc-GCc -3'
miRNA:   3'- -AGG--ACCCaGGUCCCGGCGGuaauaCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.