miRNA display CGI


Results 41 - 60 of 122 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28745 3' -57.5 NC_006146.1 + 57932 0.66 0.880324
Target:  5'- -gCUGG--CCGGcGCCGCCAUgGUGCu -3'
miRNA:   3'- agGACCcaGGUCcCGGCGGUAaUACG- -5'
28745 3' -57.5 NC_006146.1 + 71247 0.66 0.880324
Target:  5'- cUCCUGGGgCCuggcggGGGGCgGCCucuacGCc -3'
miRNA:   3'- -AGGACCCaGG------UCCCGgCGGuaauaCG- -5'
28745 3' -57.5 NC_006146.1 + 157759 0.66 0.865958
Target:  5'- gCCUGGGaggUCCGGGGUguugaGCCugc-UGCc -3'
miRNA:   3'- aGGACCC---AGGUCCCGg----CGGuaauACG- -5'
28745 3' -57.5 NC_006146.1 + 151604 0.66 0.865958
Target:  5'- gCCUGGGaggUCCGGGGUguugaGCCugc-UGCc -3'
miRNA:   3'- aGGACCC---AGGUCCCGg----CGGuaauACG- -5'
28745 3' -57.5 NC_006146.1 + 148526 0.66 0.865958
Target:  5'- gCCUGGGaggUCCGGGGUguugaGCCugc-UGCc -3'
miRNA:   3'- aGGACCC---AGGUCCCGg----CGGuaauACG- -5'
28745 3' -57.5 NC_006146.1 + 8516 0.67 0.818149
Target:  5'- aCCgGGGUCCcgggcgcGGGCgCGCCAagggGCu -3'
miRNA:   3'- aGGaCCCAGGu------CCCG-GCGGUaauaCG- -5'
28745 3' -57.5 NC_006146.1 + 42623 0.67 0.82657
Target:  5'- gCCUGGGgCUcGGccGCCGCCGUgg-GCc -3'
miRNA:   3'- aGGACCCaGGuCC--CGGCGGUAauaCG- -5'
28745 3' -57.5 NC_006146.1 + 105193 0.67 0.82657
Target:  5'- aCCgGGG-CCGGGGa-GCCGgggGUGCc -3'
miRNA:   3'- aGGaCCCaGGUCCCggCGGUaa-UACG- -5'
28745 3' -57.5 NC_006146.1 + 143398 0.67 0.82657
Target:  5'- gUgUGGGUCCuuguGGGucuCCGCCgguugggcuGUUGUGCc -3'
miRNA:   3'- aGgACCCAGGu---CCC---GGCGG---------UAAUACG- -5'
28745 3' -57.5 NC_006146.1 + 146476 0.67 0.82657
Target:  5'- gUgUGGGUCCuuguGGGucuCCGCCgguugggcuGUUGUGCc -3'
miRNA:   3'- aGgACCCAGGu---CCC---GGCGG---------UAAUACG- -5'
28745 3' -57.5 NC_006146.1 + 149554 0.67 0.82657
Target:  5'- gUgUGGGUCCuuguGGGucuCCGCCgguugggcuGUUGUGCc -3'
miRNA:   3'- aGgACCCAGGu---CCC---GGCGG---------UAAUACG- -5'
28745 3' -57.5 NC_006146.1 + 152632 0.67 0.82657
Target:  5'- gUgUGGGUCCuuguGGGucuCCGCCgguugggcuGUUGUGCc -3'
miRNA:   3'- aGgACCCAGGu---CCC---GGCGG---------UAAUACG- -5'
28745 3' -57.5 NC_006146.1 + 145448 0.66 0.865958
Target:  5'- gCCUGGGaggUCCGGGGUguugaGCCugc-UGCc -3'
miRNA:   3'- aGGACCC---AGGUCCCGg----CGGuaauACG- -5'
28745 3' -57.5 NC_006146.1 + 142370 0.66 0.865958
Target:  5'- gCCUGGGaggUCCGGGGUguugaGCCugc-UGCc -3'
miRNA:   3'- aGGACCC---AGGUCCCGg----CGGuaauACG- -5'
28745 3' -57.5 NC_006146.1 + 91763 0.66 0.850775
Target:  5'- uUCUUGGGUgggugCCuGGGgUGCCGUgcugGCa -3'
miRNA:   3'- -AGGACCCA-----GGuCCCgGCGGUAaua-CG- -5'
28745 3' -57.5 NC_006146.1 + 154682 0.67 0.83482
Target:  5'- gCCUGGGagUCCGGGGUguugaGCCugc-UGCc -3'
miRNA:   3'- aGGACCC--AGGUCCCGg----CGGuaauACG- -5'
28745 3' -57.5 NC_006146.1 + 155709 0.67 0.82657
Target:  5'- gUgUGGGUCCuuguGGGucuCCGCCgguugggcuGUUGUGCc -3'
miRNA:   3'- aGgACCCAGGu---CCC---GGCGG---------UAAUACG- -5'
28745 3' -57.5 NC_006146.1 + 145707 0.66 0.880324
Target:  5'- gCCUGGGagCAGGaGCgCGUCAgcuugAUGUc -3'
miRNA:   3'- aGGACCCagGUCC-CG-GCGGUaa---UACG- -5'
28745 3' -57.5 NC_006146.1 + 71456 0.74 0.413757
Target:  5'- cUCUGGGgauguggaacuguuUCCAGGGCCuGCCGUUuggccggugGUGCc -3'
miRNA:   3'- aGGACCC--------------AGGUCCCGG-CGGUAA---------UACG- -5'
28745 3' -57.5 NC_006146.1 + 49249 0.73 0.460768
Target:  5'- cUCC-GGGUCCAGGGCCGgUAgcccccUGUa -3'
miRNA:   3'- -AGGaCCCAGGUCCCGGCgGUaau---ACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.