miRNA display CGI


Results 1 - 20 of 103 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28745 5' -53.6 NC_006146.1 + 156387 1.11 0.003678
Target:  5'- gAGACAAAAUGGCGCCCAGAUCGCCUCa -3'
miRNA:   3'- -UCUGUUUUACCGCGGGUCUAGCGGAG- -5'
28745 5' -53.6 NC_006146.1 + 153309 1.11 0.003678
Target:  5'- gAGACAAAAUGGCGCCCAGAUCGCCUCa -3'
miRNA:   3'- -UCUGUUUUACCGCGGGUCUAGCGGAG- -5'
28745 5' -53.6 NC_006146.1 + 150231 1.11 0.003678
Target:  5'- gAGACAAAAUGGCGCCCAGAUCGCCUCa -3'
miRNA:   3'- -UCUGUUUUACCGCGGGUCUAGCGGAG- -5'
28745 5' -53.6 NC_006146.1 + 147153 1.11 0.003678
Target:  5'- gAGACAAAAUGGCGCCCAGAUCGCCUCa -3'
miRNA:   3'- -UCUGUUUUACCGCGGGUCUAGCGGAG- -5'
28745 5' -53.6 NC_006146.1 + 144075 1.11 0.003678
Target:  5'- gAGACAAAAUGGCGCCCAGAUCGCCUCa -3'
miRNA:   3'- -UCUGUUUUACCGCGGGUCUAGCGGAG- -5'
28745 5' -53.6 NC_006146.1 + 54248 0.78 0.419496
Target:  5'- uGGACGAGAUGGcCGCCCAGuuuGUgGCCa- -3'
miRNA:   3'- -UCUGUUUUACC-GCGGGUC---UAgCGGag -5'
28745 5' -53.6 NC_006146.1 + 133833 0.77 0.475239
Target:  5'- gGGugAGGAUGGUggGCCCAGAcgcaGCCUCu -3'
miRNA:   3'- -UCugUUUUACCG--CGGGUCUag--CGGAG- -5'
28745 5' -53.6 NC_006146.1 + 112114 0.74 0.606434
Target:  5'- gGGugGAGGUGGUGCUgGuGGUgGCCUCg -3'
miRNA:   3'- -UCugUUUUACCGCGGgU-CUAgCGGAG- -5'
28745 5' -53.6 NC_006146.1 + 4790 0.74 0.637732
Target:  5'- cAGuACGAGuuucuGCGCCCGGggCGCCUCa -3'
miRNA:   3'- -UC-UGUUUuac--CGCGGGUCuaGCGGAG- -5'
28745 5' -53.6 NC_006146.1 + 73950 0.74 0.637732
Target:  5'- cGACAcccUGGCGCCCAGAcUCGCg-- -3'
miRNA:   3'- uCUGUuuuACCGCGGGUCU-AGCGgag -5'
28745 5' -53.6 NC_006146.1 + 126941 0.73 0.658588
Target:  5'- uGGCAGGAUGGCGCucuCCGGG-CGCgUCu -3'
miRNA:   3'- uCUGUUUUACCGCG---GGUCUaGCGgAG- -5'
28745 5' -53.6 NC_006146.1 + 135 0.73 0.689684
Target:  5'- aGGACu--AUGGCGCCUGGAUgGCUg- -3'
miRNA:   3'- -UCUGuuuUACCGCGGGUCUAgCGGag -5'
28745 5' -53.6 NC_006146.1 + 57996 0.72 0.720331
Target:  5'- aGGACGAGcUGGagGCCCGGGUCucgGCCUUc -3'
miRNA:   3'- -UCUGUUUuACCg-CGGGUCUAG---CGGAG- -5'
28745 5' -53.6 NC_006146.1 + 110843 0.72 0.720331
Target:  5'- gGGACGAGGcGGCGCCCgaucAGAgggacgcugCGUCUCg -3'
miRNA:   3'- -UCUGUUUUaCCGCGGG----UCUa--------GCGGAG- -5'
28745 5' -53.6 NC_006146.1 + 140758 0.72 0.75027
Target:  5'- uGAUAGAAUGGCuaCUAGGUUGCCc- -3'
miRNA:   3'- uCUGUUUUACCGcgGGUCUAGCGGag -5'
28745 5' -53.6 NC_006146.1 + 7826 0.71 0.769705
Target:  5'- gAGACuccAUGGCGCCCGGuagacaccuGUCGgaCCUCu -3'
miRNA:   3'- -UCUGuuuUACCGCGGGUC---------UAGC--GGAG- -5'
28745 5' -53.6 NC_006146.1 + 68739 0.71 0.797877
Target:  5'- -cGCGGGGUGGUggagGCCCAGGUgGCCa- -3'
miRNA:   3'- ucUGUUUUACCG----CGGGUCUAgCGGag -5'
28745 5' -53.6 NC_006146.1 + 11443 0.71 0.806968
Target:  5'- uGGcCAAGGUGGCgGCCCucaaGGAguucccCGCCUCg -3'
miRNA:   3'- -UCuGUUUUACCG-CGGG----UCUa-----GCGGAG- -5'
28745 5' -53.6 NC_006146.1 + 86521 0.71 0.806969
Target:  5'- gAGGCcauGAUGGcCGCCCGGuccaCGCCUa -3'
miRNA:   3'- -UCUGuu-UUACC-GCGGGUCua--GCGGAg -5'
28745 5' -53.6 NC_006146.1 + 122016 0.7 0.81501
Target:  5'- gAGACAGAAagaggcgcaggccUGGCGCCUGGAg-GCCg- -3'
miRNA:   3'- -UCUGUUUU-------------ACCGCGGGUCUagCGGag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.