miRNA display CGI


Results 1 - 20 of 314 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28746 5' -64.9 NC_006146.1 + 170035 0.71 0.307935
Target:  5'- cUCCCgcggCCAgUCCCUggaugucggggaGGGCCcgGGGCCGc -3'
miRNA:   3'- -GGGGa---GGUgAGGGG------------CCCGGa-UCCGGC- -5'
28746 5' -64.9 NC_006146.1 + 169103 0.71 0.307935
Target:  5'- cUCCCgcggCCAgUCCCUggaugucggggaGGGCCcgGGGCCGc -3'
miRNA:   3'- -GGGGa---GGUgAGGGG------------CCCGGa-UCCGGC- -5'
28746 5' -64.9 NC_006146.1 + 168171 0.71 0.307935
Target:  5'- cUCCCgcggCCAgUCCCUggaugucggggaGGGCCcgGGGCCGc -3'
miRNA:   3'- -GGGGa---GGUgAGGGG------------CCCGGa-UCCGGC- -5'
28746 5' -64.9 NC_006146.1 + 168131 0.67 0.486523
Target:  5'- gUCUUCC-CUgacaUCCGGGCUUGGGCCu -3'
miRNA:   3'- gGGGAGGuGAg---GGGCCCGGAUCCGGc -5'
28746 5' -64.9 NC_006146.1 + 167239 0.71 0.307935
Target:  5'- cUCCCgcggCCAgUCCCUggaugucggggaGGGCCcgGGGCCGc -3'
miRNA:   3'- -GGGGa---GGUgAGGGG------------CCCGGa-UCCGGC- -5'
28746 5' -64.9 NC_006146.1 + 164475 0.66 0.578065
Target:  5'- aCCCCagggcCCACauggCCCUGGGCCaaaGGGaCCc -3'
miRNA:   3'- -GGGGa----GGUGa---GGGGCCCGGa--UCC-GGc -5'
28746 5' -64.9 NC_006146.1 + 163784 0.67 0.522441
Target:  5'- aUCCUCUaguuaguauGCagCCUGGGCCUuggcGGGCCa -3'
miRNA:   3'- gGGGAGG---------UGagGGGCCCGGA----UCCGGc -5'
28746 5' -64.9 NC_006146.1 + 162379 0.67 0.486523
Target:  5'- gCCCCUUgGCgcgcccgCgCCCGGGaCCccggUGGGCCa -3'
miRNA:   3'- -GGGGAGgUGa------G-GGGCCC-GG----AUCCGGc -5'
28746 5' -64.9 NC_006146.1 + 159873 0.71 0.314565
Target:  5'- -aCCUCCcugguCUCCUCgcagaGGGCCUcgAGGCCGg -3'
miRNA:   3'- ggGGAGGu----GAGGGG-----CCCGGA--UCCGGC- -5'
28746 5' -64.9 NC_006146.1 + 158149 0.71 0.301411
Target:  5'- gCCCgccggCUCCAa-CCUCGGGCCUcuGGGCUGg -3'
miRNA:   3'- -GGG-----GAGGUgaGGGGCCCGGA--UCCGGC- -5'
28746 5' -64.9 NC_006146.1 + 158060 0.66 0.568682
Target:  5'- gCCCCaggCGcCUCCUCGGGUCc-GGCCGc -3'
miRNA:   3'- -GGGGag-GU-GAGGGGCCCGGauCCGGC- -5'
28746 5' -64.9 NC_006146.1 + 157913 1.1 0.000564
Target:  5'- cCCCCUCCACUCCCCGGGCCUAGGCCGa -3'
miRNA:   3'- -GGGGAGGUGAGGGGCCCGGAUCCGGC- -5'
28746 5' -64.9 NC_006146.1 + 157824 0.66 0.559337
Target:  5'- aCUCCUCCGCgcuggCCCCggaggggacGGGCaccgAGcGCCGc -3'
miRNA:   3'- -GGGGAGGUGa----GGGG---------CCCGga--UC-CGGC- -5'
28746 5' -64.9 NC_006146.1 + 157512 0.68 0.46037
Target:  5'- gCUCCUCCG-UCCUCuggacuagGGGcCCUGGGCCc -3'
miRNA:   3'- -GGGGAGGUgAGGGG--------CCC-GGAUCCGGc -5'
28746 5' -64.9 NC_006146.1 + 156989 0.71 0.31927
Target:  5'- aCCCgCCACUCCUuccaaaaagucacgCGcGGCCUcGGCCGu -3'
miRNA:   3'- gGGGaGGUGAGGG--------------GC-CCGGAuCCGGC- -5'
28746 5' -64.9 NC_006146.1 + 156892 0.69 0.393749
Target:  5'- gCCCUCCGCcuUCCagcaccagcccggCCGaGGCCUGGGUgGc -3'
miRNA:   3'- gGGGAGGUG--AGG-------------GGC-CCGGAUCCGgC- -5'
28746 5' -64.9 NC_006146.1 + 156056 0.73 0.221111
Target:  5'- cCCCCUCgGCcUCCCGcGGCCccGGGCCc -3'
miRNA:   3'- -GGGGAGgUGaGGGGC-CCGGa-UCCGGc -5'
28746 5' -64.9 NC_006146.1 + 155070 0.71 0.301411
Target:  5'- gCCCgccggCUCCAa-CCUCGGGCCUcuGGGCUGg -3'
miRNA:   3'- -GGG-----GAGGUgaGGGGCCCGGA--UCCGGC- -5'
28746 5' -64.9 NC_006146.1 + 154835 1.1 0.000564
Target:  5'- cCCCCUCCACUCCCCGGGCCUAGGCCGa -3'
miRNA:   3'- -GGGGAGGUGAGGGGCCCGGAUCCGGC- -5'
28746 5' -64.9 NC_006146.1 + 154434 0.68 0.46037
Target:  5'- gCUCCUCCG-UCCUCuggacuagGGGcCCUGGGCCc -3'
miRNA:   3'- -GGGGAGGUgAGGGG--------CCC-GGAUCCGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.