miRNA display CGI


Results 81 - 100 of 314 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28746 5' -64.9 NC_006146.1 + 41044 0.73 0.242001
Target:  5'- cCCCCgUCCGCggcggCCCUggGGGCCUcgggguggagggAGGCCa -3'
miRNA:   3'- -GGGG-AGGUGa----GGGG--CCCGGA------------UCCGGc -5'
28746 5' -64.9 NC_006146.1 + 118082 0.73 0.236629
Target:  5'- gCCCUCCGCaUCCUGGGCac-GGCCu -3'
miRNA:   3'- gGGGAGGUGaGGGGCCCGgauCCGGc -5'
28746 5' -64.9 NC_006146.1 + 24395 0.73 0.226185
Target:  5'- gCgCCUUCGCUCUCCGGGUUUacguuccaggAGGCCGc -3'
miRNA:   3'- -GgGGAGGUGAGGGGCCCGGA----------UCCGGC- -5'
28746 5' -64.9 NC_006146.1 + 3009 0.73 0.216134
Target:  5'- gCCC-CCGCgagggUCCCCGGGCCgccccgGGGCUc -3'
miRNA:   3'- gGGGaGGUG-----AGGGGCCCGGa-----UCCGGc -5'
28746 5' -64.9 NC_006146.1 + 2077 0.73 0.216134
Target:  5'- gCCC-CCGCgagggUCCCCGGGCCgccccgGGGCUc -3'
miRNA:   3'- gGGGaGGUG-----AGGGGCCCGGa-----UCCGGc -5'
28746 5' -64.9 NC_006146.1 + 1145 0.73 0.216134
Target:  5'- gCCC-CCGCgagggUCCCCGGGCCgccccgGGGCUc -3'
miRNA:   3'- gGGGaGGUG-----AGGGGCCCGGa-----UCCGGc -5'
28746 5' -64.9 NC_006146.1 + 74247 0.74 0.201777
Target:  5'- gCCCUgcgcggCCGuCUCCCCGGGCU--GGCCa -3'
miRNA:   3'- -GGGGa-----GGU-GAGGGGCCCGGauCCGGc -5'
28746 5' -64.9 NC_006146.1 + 76088 0.74 0.188256
Target:  5'- aCCUUCCuggugggcaAC-CCCCGGGCCUcGGCCu -3'
miRNA:   3'- gGGGAGG---------UGaGGGGCCCGGAuCCGGc -5'
28746 5' -64.9 NC_006146.1 + 119078 0.76 0.152381
Target:  5'- cCCCCUCCACgccgCCCCGgggaacggguGGCUUGGcGCCu -3'
miRNA:   3'- -GGGGAGGUGa---GGGGC----------CCGGAUC-CGGc -5'
28746 5' -64.9 NC_006146.1 + 117782 0.78 0.11147
Target:  5'- aCCgUCgCGCUcCCCCGGGCC-GGGCCGc -3'
miRNA:   3'- gGGgAG-GUGA-GGGGCCCGGaUCCGGC- -5'
28746 5' -64.9 NC_006146.1 + 119034 0.79 0.091655
Target:  5'- uCCCCUCUucauccccaUCCCCGGGCUcGGGCCa -3'
miRNA:   3'- -GGGGAGGug-------AGGGGCCCGGaUCCGGc -5'
28746 5' -64.9 NC_006146.1 + 3294 0.8 0.075213
Target:  5'- cCCCCUCCGC-CCCCGaGGCCcccaggggAGGCCc -3'
miRNA:   3'- -GGGGAGGUGaGGGGC-CCGGa-------UCCGGc -5'
28746 5' -64.9 NC_006146.1 + 2362 0.8 0.075213
Target:  5'- cCCCCUCCGC-CCCCGaGGCCcccaggggAGGCCc -3'
miRNA:   3'- -GGGGAGGUGaGGGGC-CCGGa-------UCCGGc -5'
28746 5' -64.9 NC_006146.1 + 1430 0.8 0.075213
Target:  5'- cCCCCUCCGC-CCCCGaGGCCcccaggggAGGCCc -3'
miRNA:   3'- -GGGGAGGUGaGGGGC-CCGGa-------UCCGGc -5'
28746 5' -64.9 NC_006146.1 + 499 0.8 0.075213
Target:  5'- cCCCCUCCGC-CCCCGaGGCCcccaggggAGGCCc -3'
miRNA:   3'- -GGGGAGGUGaGGGGC-CCGGa-------UCCGGc -5'
28746 5' -64.9 NC_006146.1 + 57196 0.81 0.06162
Target:  5'- gUCCCggcugCCGCcgccgUCCCCGGGCCggAGGCCGg -3'
miRNA:   3'- -GGGGa----GGUG-----AGGGGCCCGGa-UCCGGC- -5'
28746 5' -64.9 NC_006146.1 + 103560 0.83 0.044448
Target:  5'- aCCCCgaggauggGCUCgCCCGGGCCUGGGCCGg -3'
miRNA:   3'- -GGGGagg-----UGAG-GGGCCCGGAUCCGGC- -5'
28746 5' -64.9 NC_006146.1 + 148680 0.99 0.003522
Target:  5'- cCCCCUCCACUCCCCGGGCCUA-GCCGa -3'
miRNA:   3'- -GGGGAGGUGAGGGGCCCGGAUcCGGC- -5'
28746 5' -64.9 NC_006146.1 + 157913 1.1 0.000564
Target:  5'- cCCCCUCCACUCCCCGGGCCUAGGCCGa -3'
miRNA:   3'- -GGGGAGGUGAGGGGCCCGGAUCCGGC- -5'
28746 5' -64.9 NC_006146.1 + 154835 1.1 0.000564
Target:  5'- cCCCCUCCACUCCCCGGGCCUAGGCCGa -3'
miRNA:   3'- -GGGGAGGUGAGGGGCCCGGAUCCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.