miRNA display CGI


Results 101 - 120 of 314 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28746 5' -64.9 NC_006146.1 + 136748 0.67 0.504344
Target:  5'- aCCCC-CCACccUCgCCGGGgCUccgggAGGCCc -3'
miRNA:   3'- -GGGGaGGUG--AGgGGCCCgGA-----UCCGGc -5'
28746 5' -64.9 NC_006146.1 + 129554 0.67 0.504344
Target:  5'- aCCaCCgCCAggCCCUGGGCCagaUAGGuuGg -3'
miRNA:   3'- -GG-GGaGGUgaGGGGCCCGG---AUCCggC- -5'
28746 5' -64.9 NC_006146.1 + 118551 0.67 0.498967
Target:  5'- aCCC-CCACUgccaaaaggacgccgCCCCGGGCaccccGGCCc -3'
miRNA:   3'- gGGGaGGUGA---------------GGGGCCCGgau--CCGGc -5'
28746 5' -64.9 NC_006146.1 + 33026 0.67 0.495397
Target:  5'- cCCCCUgCCGg-CCCgGGGCg-GGGCCc -3'
miRNA:   3'- -GGGGA-GGUgaGGGgCCCGgaUCCGGc -5'
28746 5' -64.9 NC_006146.1 + 168131 0.67 0.486523
Target:  5'- gUCUUCC-CUgacaUCCGGGCUUGGGCCu -3'
miRNA:   3'- gGGGAGGuGAg---GGGCCCGGAUCCGGc -5'
28746 5' -64.9 NC_006146.1 + 103671 0.67 0.486523
Target:  5'- -gCCUCCgugGCUUCCUGuGCCU-GGCCGg -3'
miRNA:   3'- ggGGAGG---UGAGGGGCcCGGAuCCGGC- -5'
28746 5' -64.9 NC_006146.1 + 33193 0.67 0.486523
Target:  5'- gCCCgggCAC-CCCCGGGgggAGGCCGg -3'
miRNA:   3'- gGGGag-GUGaGGGGCCCggaUCCGGC- -5'
28746 5' -64.9 NC_006146.1 + 13979 0.67 0.477725
Target:  5'- gCCCgucagcgCCGC-CaCCCaGGCCUcGGCCGg -3'
miRNA:   3'- gGGGa------GGUGaG-GGGcCCGGAuCCGGC- -5'
28746 5' -64.9 NC_006146.1 + 23933 0.67 0.47685
Target:  5'- gCCCCUCCugccccaagggcgGCgacuuuccCCCCGGGUCgggugggGGaGCCGg -3'
miRNA:   3'- -GGGGAGG-------------UGa-------GGGGCCCGGa------UC-CGGC- -5'
28746 5' -64.9 NC_006146.1 + 20353 0.67 0.51336
Target:  5'- cCCCCUuuGC-CCCCuGGC--AGGCCa -3'
miRNA:   3'- -GGGGAggUGaGGGGcCCGgaUCCGGc -5'
28746 5' -64.9 NC_006146.1 + 26509 0.67 0.51336
Target:  5'- cCCCCUuuGC-CCCCuGGC--AGGCCa -3'
miRNA:   3'- -GGGGAggUGaGGGGcCCGgaUCCGGc -5'
28746 5' -64.9 NC_006146.1 + 29587 0.67 0.51336
Target:  5'- cCCCCUuuGC-CCCCuGGC--AGGCCa -3'
miRNA:   3'- -GGGGAggUGaGGGGcCCGgaUCCGGc -5'
28746 5' -64.9 NC_006146.1 + 31828 0.67 0.522441
Target:  5'- gCCCC-CCGCgCCaCCaGGGCCcguaugguGGCCGc -3'
miRNA:   3'- -GGGGaGGUGaGG-GG-CCCGGau------CCGGC- -5'
28746 5' -64.9 NC_006146.1 + 63117 0.67 0.522441
Target:  5'- aCCCUgCGCaggugCCCCuGGGaCCUGcuGGCCa -3'
miRNA:   3'- gGGGAgGUGa----GGGG-CCC-GGAU--CCGGc -5'
28746 5' -64.9 NC_006146.1 + 163784 0.67 0.522441
Target:  5'- aUCCUCUaguuaguauGCagCCUGGGCCUuggcGGGCCa -3'
miRNA:   3'- gGGGAGG---------UGagGGGCCCGGA----UCCGGc -5'
28746 5' -64.9 NC_006146.1 + 69219 0.67 0.535257
Target:  5'- cCCCCUCUagcGCcgcccguagcccguuUCCCCccaGGGCC-AGGuCCGg -3'
miRNA:   3'- -GGGGAGG---UG---------------AGGGG---CCCGGaUCC-GGC- -5'
28746 5' -64.9 NC_006146.1 + 23431 0.67 0.51336
Target:  5'- cCCCCUuuGC-CCCCuGGC--AGGCCa -3'
miRNA:   3'- -GGGGAggUGaGGGGcCCGgaUCCGGc -5'
28746 5' -64.9 NC_006146.1 + 14197 0.67 0.51336
Target:  5'- cCCCCUuuGC-CCCCuGGC--AGGCCa -3'
miRNA:   3'- -GGGGAggUGaGGGGcCCGgaUCCGGc -5'
28746 5' -64.9 NC_006146.1 + 93604 0.68 0.446729
Target:  5'- aCCCgCCggGCUCCUgGGGCUgcuguccuccccggAGGCCGa -3'
miRNA:   3'- gGGGaGG--UGAGGGgCCCGGa-------------UCCGGC- -5'
28746 5' -64.9 NC_006146.1 + 29473 0.68 0.43498
Target:  5'- uCCCCaCCcCUCCCCGGccacCCcAGGCCc -3'
miRNA:   3'- -GGGGaGGuGAGGGGCCc---GGaUCCGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.