miRNA display CGI


Results 101 - 120 of 314 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28746 5' -64.9 NC_006146.1 + 18105 0.66 0.559337
Target:  5'- aCCUUCCAgg-CCCGGGCCcccaggucucGGGCCa -3'
miRNA:   3'- gGGGAGGUgagGGGCCCGGa---------UCCGGc -5'
28746 5' -64.9 NC_006146.1 + 15027 0.66 0.559337
Target:  5'- aCCUUCCAgg-CCCGGGCCcccaggucucGGGCCa -3'
miRNA:   3'- gGGGAGGUgagGGGCCCGGa---------UCCGGc -5'
28746 5' -64.9 NC_006146.1 + 10803 0.66 0.559337
Target:  5'- aUCCUCCACUagaggccgCCCaUGGGCCaugagaUAGGCUc -3'
miRNA:   3'- gGGGAGGUGA--------GGG-GCCCGG------AUCCGGc -5'
28746 5' -64.9 NC_006146.1 + 157824 0.66 0.559337
Target:  5'- aCUCCUCCGCgcuggCCCCggaggggacGGGCaccgAGcGCCGc -3'
miRNA:   3'- -GGGGAGGUGa----GGGG---------CCCGga--UC-CGGC- -5'
28746 5' -64.9 NC_006146.1 + 138853 0.66 0.559337
Target:  5'- gCUCgCCACg-CCCGGGucaugaCCUGGGCCa -3'
miRNA:   3'- gGGGaGGUGagGGGCCC------GGAUCCGGc -5'
28746 5' -64.9 NC_006146.1 + 27756 0.66 0.553751
Target:  5'- -nCCUCCGCgUCCCCguccuccagagucacGGGCUacAGGCCc -3'
miRNA:   3'- ggGGAGGUG-AGGGG---------------CCCGGa-UCCGGc -5'
28746 5' -64.9 NC_006146.1 + 24678 0.66 0.553751
Target:  5'- -nCCUCCGCgUCCCCguccuccagagucacGGGCUacAGGCCc -3'
miRNA:   3'- ggGGAGGUG-AGGGG---------------CCCGGa-UCCGGc -5'
28746 5' -64.9 NC_006146.1 + 21600 0.66 0.553751
Target:  5'- -nCCUCCGCgUCCCCguccuccagagucacGGGCUacAGGCCc -3'
miRNA:   3'- ggGGAGGUG-AGGGG---------------CCCGGa-UCCGGc -5'
28746 5' -64.9 NC_006146.1 + 18522 0.66 0.553751
Target:  5'- -nCCUCCGCgUCCCCguccuccagagucacGGGCUacAGGCCc -3'
miRNA:   3'- ggGGAGGUG-AGGGG---------------CCCGGa-UCCGGc -5'
28746 5' -64.9 NC_006146.1 + 15444 0.66 0.553751
Target:  5'- -nCCUCCGCgUCCCCguccuccagagucacGGGCUacAGGCCc -3'
miRNA:   3'- ggGGAGGUG-AGGGG---------------CCCGGa-UCCGGc -5'
28746 5' -64.9 NC_006146.1 + 12365 0.66 0.553751
Target:  5'- -nCCUCCGCgUCCCCguccuccagagucacGGGCUacAGGCCc -3'
miRNA:   3'- ggGGAGGUG-AGGGG---------------CCCGGa-UCCGGc -5'
28746 5' -64.9 NC_006146.1 + 56564 0.66 0.550036
Target:  5'- cCCCCgUCCAC-CUCCGucaggggcGGCCgGGcGCCGa -3'
miRNA:   3'- -GGGG-AGGUGaGGGGC--------CCGGaUC-CGGC- -5'
28746 5' -64.9 NC_006146.1 + 38352 0.66 0.550036
Target:  5'- -aUCUCaCGCUCcgaCCCGaGGCCUucgAGGCCa -3'
miRNA:   3'- ggGGAG-GUGAG---GGGC-CCGGA---UCCGGc -5'
28746 5' -64.9 NC_006146.1 + 56058 0.66 0.550036
Target:  5'- gCCCCUCCcgcgggaagGCgucCCaCCGGGCCaagUAGGUg- -3'
miRNA:   3'- -GGGGAGG---------UGa--GG-GGCCCGG---AUCCGgc -5'
28746 5' -64.9 NC_006146.1 + 31442 0.66 0.550036
Target:  5'- cCUUCUCCAgUgcaggcacccCCCCGGGCaccguggGGGCCu -3'
miRNA:   3'- -GGGGAGGUgA----------GGGGCCCGga-----UCCGGc -5'
28746 5' -64.9 NC_006146.1 + 9151 0.66 0.549109
Target:  5'- cCCCCUcggaccucagccgCCAC-CCCCGGGCUacaaGGGUUc -3'
miRNA:   3'- -GGGGA-------------GGUGaGGGGCCCGGa---UCCGGc -5'
28746 5' -64.9 NC_006146.1 + 149269 0.66 0.549109
Target:  5'- -gCCgugCCGCUCCgcguaggCCGGGuCCUcGGCCa -3'
miRNA:   3'- ggGGa--GGUGAGG-------GGCCC-GGAuCCGGc -5'
28746 5' -64.9 NC_006146.1 + 68909 0.66 0.549109
Target:  5'- gCCaCCg-CGCUCaaaauggacgagaCCgGGGCCUGGGCCc -3'
miRNA:   3'- -GG-GGagGUGAG-------------GGgCCCGGAUCCGGc -5'
28746 5' -64.9 NC_006146.1 + 136084 0.67 0.510648
Target:  5'- gCCgggUCCGCUgCCCgguccuggagcucgGGGCCggGGGCCGg -3'
miRNA:   3'- gGGg--AGGUGAgGGG--------------CCCGGa-UCCGGC- -5'
28746 5' -64.9 NC_006146.1 + 136270 0.67 0.510648
Target:  5'- gCCgggUCCGCUgCCCgguccuggagcucgGGGCCggGGGCCGg -3'
miRNA:   3'- gGGg--AGGUGAgGGG--------------CCCGGa-UCCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.