miRNA display CGI


Results 121 - 140 of 314 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28746 5' -64.9 NC_006146.1 + 119078 0.76 0.152381
Target:  5'- cCCCCUCCACgccgCCCCGgggaacggguGGCUUGGcGCCu -3'
miRNA:   3'- -GGGGAGGUGa---GGGGC----------CCGGAUC-CGGc -5'
28746 5' -64.9 NC_006146.1 + 119034 0.79 0.091655
Target:  5'- uCCCCUCUucauccccaUCCCCGGGCUcGGGCCa -3'
miRNA:   3'- -GGGGAGGug-------AGGGGCCCGGaUCCGGc -5'
28746 5' -64.9 NC_006146.1 + 118551 0.67 0.498967
Target:  5'- aCCC-CCACUgccaaaaggacgccgCCCCGGGCaccccGGCCc -3'
miRNA:   3'- gGGGaGGUGA---------------GGGGCCCGgau--CCGGc -5'
28746 5' -64.9 NC_006146.1 + 118082 0.73 0.236629
Target:  5'- gCCCUCCGCaUCCUGGGCac-GGCCu -3'
miRNA:   3'- gGGGAGGUGaGGGGCCCGgauCCGGc -5'
28746 5' -64.9 NC_006146.1 + 117782 0.78 0.11147
Target:  5'- aCCgUCgCGCUcCCCCGGGCC-GGGCCGc -3'
miRNA:   3'- gGGgAG-GUGA-GGGGCCCGGaUCCGGC- -5'
28746 5' -64.9 NC_006146.1 + 117715 0.71 0.314565
Target:  5'- gCCCC-CCAaggCCgGGGCCgAGGCCGa -3'
miRNA:   3'- -GGGGaGGUgagGGgCCCGGaUCCGGC- -5'
28746 5' -64.9 NC_006146.1 + 117561 0.7 0.335101
Target:  5'- -aCCUCaCGCcgCCCCGcGGCCgccGGGCCu -3'
miRNA:   3'- ggGGAG-GUGa-GGGGC-CCGGa--UCCGGc -5'
28746 5' -64.9 NC_006146.1 + 117527 0.75 0.17969
Target:  5'- gUCUCacgCCuCUCCCUcgGGGCCUGGGCCGc -3'
miRNA:   3'- -GGGGa--GGuGAGGGG--CCCGGAUCCGGC- -5'
28746 5' -64.9 NC_006146.1 + 117100 0.68 0.450967
Target:  5'- gCCCC-CCGCUauggacgCCgCgCGGGCCgAGGCCc -3'
miRNA:   3'- -GGGGaGGUGA-------GG-G-GCCCGGaUCCGGc -5'
28746 5' -64.9 NC_006146.1 + 116182 0.68 0.443354
Target:  5'- uCCCCUCgGCcgcccugaCCCGGGCCc--GCCGu -3'
miRNA:   3'- -GGGGAGgUGag------GGGCCCGGaucCGGC- -5'
28746 5' -64.9 NC_006146.1 + 115640 0.71 0.307935
Target:  5'- gCCCCacgagCCGCUUcgCCCGGGCCgcccGGGCg- -3'
miRNA:   3'- -GGGGa----GGUGAG--GGGCCCGGa---UCCGgc -5'
28746 5' -64.9 NC_006146.1 + 115101 0.67 0.522441
Target:  5'- cCUCUUCCACcgCCCCGaGUCgcuGGCCa -3'
miRNA:   3'- -GGGGAGGUGa-GGGGCcCGGau-CCGGc -5'
28746 5' -64.9 NC_006146.1 + 114703 0.71 0.282483
Target:  5'- gCUCgUCCGCgagaCCCGGGCCcuggcGGCCGa -3'
miRNA:   3'- -GGGgAGGUGag--GGGCCCGGau---CCGGC- -5'
28746 5' -64.9 NC_006146.1 + 110437 0.77 0.128892
Target:  5'- gCCUCUcaCCGCUCCCCGcGGCCUGccgcucacucGGCCa -3'
miRNA:   3'- -GGGGA--GGUGAGGGGC-CCGGAU----------CCGGc -5'
28746 5' -64.9 NC_006146.1 + 110006 0.66 0.568682
Target:  5'- --gCUCCuggaUCCaCUGGGCCccAGGCCGg -3'
miRNA:   3'- gggGAGGug--AGG-GGCCCGGa-UCCGGC- -5'
28746 5' -64.9 NC_006146.1 + 109948 0.69 0.402426
Target:  5'- aCCCC-CCAC-CCCCGGGCCUc----- -3'
miRNA:   3'- -GGGGaGGUGaGGGGCCCGGAuccggc -5'
28746 5' -64.9 NC_006146.1 + 106668 0.71 0.294995
Target:  5'- gCCgUCCuCUCCCCGGGCaCgggaucccugGGGCUGu -3'
miRNA:   3'- gGGgAGGuGAGGGGCCCG-Ga---------UCCGGC- -5'
28746 5' -64.9 NC_006146.1 + 106666 0.69 0.41042
Target:  5'- gCCCCUCC-CgCCCC-GGCCcAGGCg- -3'
miRNA:   3'- -GGGGAGGuGaGGGGcCCGGaUCCGgc -5'
28746 5' -64.9 NC_006146.1 + 106466 0.66 0.56307
Target:  5'- gCCCCUCUGuCUCCuggcagcguacgccgCCGuGGCCccGGCCu -3'
miRNA:   3'- -GGGGAGGU-GAGG---------------GGC-CCGGauCCGGc -5'
28746 5' -64.9 NC_006146.1 + 106180 0.7 0.363235
Target:  5'- uCCCCggccugcugaCACgggUCCCGGGCCUccugccaGGGCCu -3'
miRNA:   3'- -GGGGag--------GUGa--GGGGCCCGGA-------UCCGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.