miRNA display CGI


Results 141 - 160 of 314 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28746 5' -64.9 NC_006146.1 + 56666 0.68 0.426698
Target:  5'- gCCCUCC-CUgaggUgCCGGGCCcccugGGGCUGg -3'
miRNA:   3'- gGGGAGGuGA----GgGGCCCGGa----UCCGGC- -5'
28746 5' -64.9 NC_006146.1 + 56702 0.68 0.432486
Target:  5'- cCCCCUCCGg--CCCGGcGUCUaaauauuucucaggGGGCCGa -3'
miRNA:   3'- -GGGGAGGUgagGGGCC-CGGA--------------UCCGGC- -5'
28746 5' -64.9 NC_006146.1 + 57196 0.81 0.06162
Target:  5'- gUCCCggcugCCGCcgccgUCCCCGGGCCggAGGCCGg -3'
miRNA:   3'- -GGGGa----GGUG-----AGGGGCCCGGa-UCCGGC- -5'
28746 5' -64.9 NC_006146.1 + 59245 0.66 0.540784
Target:  5'- -gCCUCCAUgggCCUggguguucaGGGCCU-GGCCGa -3'
miRNA:   3'- ggGGAGGUGa--GGGg--------CCCGGAuCCGGC- -5'
28746 5' -64.9 NC_006146.1 + 62354 0.66 0.587481
Target:  5'- gCCCagCCACUCCaacgCCGcGCCggagAGGCCc -3'
miRNA:   3'- gGGGa-GGUGAGG----GGCcCGGa---UCCGGc -5'
28746 5' -64.9 NC_006146.1 + 62820 0.71 0.301411
Target:  5'- gCCUCUCUugUgCCUGuGGCCcAGGCUGg -3'
miRNA:   3'- -GGGGAGGugAgGGGC-CCGGaUCCGGC- -5'
28746 5' -64.9 NC_006146.1 + 62977 0.67 0.504344
Target:  5'- cCCCCUUUuucauCUUCCUGGcCCUGGGCUc -3'
miRNA:   3'- -GGGGAGGu----GAGGGGCCcGGAUCCGGc -5'
28746 5' -64.9 NC_006146.1 + 63117 0.67 0.522441
Target:  5'- aCCCUgCGCaggugCCCCuGGGaCCUGcuGGCCa -3'
miRNA:   3'- gGGGAgGUGa----GGGG-CCC-GGAU--CCGGc -5'
28746 5' -64.9 NC_006146.1 + 63348 0.71 0.301411
Target:  5'- uUCUUCCACgaagCCCUGGGaccCCUGGGCaCGa -3'
miRNA:   3'- gGGGAGGUGa---GGGGCCC---GGAUCCG-GC- -5'
28746 5' -64.9 NC_006146.1 + 63803 0.71 0.324028
Target:  5'- gCCCCUucccagacccacCCACUCCCCcGGCCUucauuuucucuccuGGCUGc -3'
miRNA:   3'- -GGGGA------------GGUGAGGGGcCCGGAu-------------CCGGC- -5'
28746 5' -64.9 NC_006146.1 + 65712 0.68 0.43498
Target:  5'- aCCCC-CgGCUCCCCGG-CCccGGUCa -3'
miRNA:   3'- -GGGGaGgUGAGGGGCCcGGauCCGGc -5'
28746 5' -64.9 NC_006146.1 + 68909 0.66 0.549109
Target:  5'- gCCaCCg-CGCUCaaaauggacgagaCCgGGGCCUGGGCCc -3'
miRNA:   3'- -GG-GGagGUGAG-------------GGgCCCGGAUCCGGc -5'
28746 5' -64.9 NC_006146.1 + 69219 0.67 0.535257
Target:  5'- cCCCCUCUagcGCcgcccguagcccguuUCCCCccaGGGCC-AGGuCCGg -3'
miRNA:   3'- -GGGGAGG---UG---------------AGGGG---CCCGGaUCC-GGC- -5'
28746 5' -64.9 NC_006146.1 + 71514 0.66 0.547255
Target:  5'- cCCCCUggCCgACUCgcuCCUGGGCCUcaacgcgcggcccgGGcGCCGa -3'
miRNA:   3'- -GGGGA--GG-UGAG---GGGCCCGGA--------------UC-CGGC- -5'
28746 5' -64.9 NC_006146.1 + 71854 0.7 0.34216
Target:  5'- aCCCCgaCAC-CCgCCGGGCCcugggGGGCCu -3'
miRNA:   3'- -GGGGagGUGaGG-GGCCCGGa----UCCGGc -5'
28746 5' -64.9 NC_006146.1 + 71904 0.68 0.426698
Target:  5'- aCCCUCCugcgcgcggcCUCugaCCUGGGCCUgaccuGGGCCu -3'
miRNA:   3'- gGGGAGGu---------GAG---GGGCCCGGA-----UCCGGc -5'
28746 5' -64.9 NC_006146.1 + 73035 0.68 0.46037
Target:  5'- gCCCUcguUCCACggCCCgGGGUCggcGGCCc -3'
miRNA:   3'- -GGGG---AGGUGa-GGGgCCCGGau-CCGGc -5'
28746 5' -64.9 NC_006146.1 + 73540 0.7 0.347885
Target:  5'- gCCaggCUCCggaGCUCCCCGGGCgggugguuguGGCCGg -3'
miRNA:   3'- -GGg--GAGG---UGAGGGGCCCGgau-------CCGGC- -5'
28746 5' -64.9 NC_006146.1 + 74247 0.74 0.201777
Target:  5'- gCCCUgcgcggCCGuCUCCCCGGGCU--GGCCa -3'
miRNA:   3'- -GGGGa-----GGU-GAGGGGCCCGGauCCGGc -5'
28746 5' -64.9 NC_006146.1 + 76088 0.74 0.188256
Target:  5'- aCCUUCCuggugggcaAC-CCCCGGGCCUcGGCCu -3'
miRNA:   3'- gGGGAGG---------UGaGGGGCCCGGAuCCGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.