miRNA display CGI


Results 141 - 160 of 314 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28746 5' -64.9 NC_006146.1 + 105828 0.66 0.559337
Target:  5'- gCCCCUCCug-CCCCGcGCC---GCCGa -3'
miRNA:   3'- -GGGGAGGugaGGGGCcCGGaucCGGC- -5'
28746 5' -64.9 NC_006146.1 + 103671 0.67 0.486523
Target:  5'- -gCCUCCgugGCUUCCUGuGCCU-GGCCGg -3'
miRNA:   3'- ggGGAGG---UGAGGGGCcCGGAuCCGGC- -5'
28746 5' -64.9 NC_006146.1 + 103560 0.83 0.044448
Target:  5'- aCCCCgaggauggGCUCgCCCGGGCCUGGGCCGg -3'
miRNA:   3'- -GGGGagg-----UGAG-GGGCCCGGAUCCGGC- -5'
28746 5' -64.9 NC_006146.1 + 102020 0.68 0.43498
Target:  5'- cCUUCUCCAuCUCCaucaGGGCC-AGGCUGu -3'
miRNA:   3'- -GGGGAGGU-GAGGgg--CCCGGaUCCGGC- -5'
28746 5' -64.9 NC_006146.1 + 101280 0.67 0.51336
Target:  5'- gCCC-CCAgUaCCCCGGGgaCgUGGGCCu -3'
miRNA:   3'- gGGGaGGUgA-GGGGCCC--GgAUCCGGc -5'
28746 5' -64.9 NC_006146.1 + 99452 0.69 0.386739
Target:  5'- gCCCU-CGCUCCUCGGcGCCaGGuGCCa -3'
miRNA:   3'- gGGGAgGUGAGGGGCC-CGGaUC-CGGc -5'
28746 5' -64.9 NC_006146.1 + 98895 0.68 0.469006
Target:  5'- cCCCCgCUACUCaCCCGcGCCaGGGUCu -3'
miRNA:   3'- -GGGGaGGUGAG-GGGCcCGGaUCCGGc -5'
28746 5' -64.9 NC_006146.1 + 93604 0.68 0.446729
Target:  5'- aCCCgCCggGCUCCUgGGGCUgcuguccuccccggAGGCCGa -3'
miRNA:   3'- gGGGaGG--UGAGGGgCCCGGa-------------UCCGGC- -5'
28746 5' -64.9 NC_006146.1 + 91747 0.66 0.568682
Target:  5'- -gCCUCCGUUCUCCGGGUucUUGGGUgGg -3'
miRNA:   3'- ggGGAGGUGAGGGGCCCG--GAUCCGgC- -5'
28746 5' -64.9 NC_006146.1 + 82556 0.66 0.568682
Target:  5'- -gCCUCCuuuaACcCCCUGGGCCcaacGGCCu -3'
miRNA:   3'- ggGGAGG----UGaGGGGCCCGGau--CCGGc -5'
28746 5' -64.9 NC_006146.1 + 81750 0.69 0.378285
Target:  5'- gCCCUuacaggaUCCAC-CCCCGGGCUUccgggAGGCa- -3'
miRNA:   3'- -GGGG-------AGGUGaGGGGCCCGGA-----UCCGgc -5'
28746 5' -64.9 NC_006146.1 + 81521 0.66 0.559337
Target:  5'- uCCCCUcggugcccaCCACgagaCCUCGGGCCUcGGaaGa -3'
miRNA:   3'- -GGGGA---------GGUGa---GGGGCCCGGAuCCggC- -5'
28746 5' -64.9 NC_006146.1 + 81213 0.67 0.522441
Target:  5'- aUCCCaggCCGUUCCCCGGGCCccuuccGUCGg -3'
miRNA:   3'- -GGGGa--GGUGAGGGGCCCGGauc---CGGC- -5'
28746 5' -64.9 NC_006146.1 + 78836 0.7 0.34216
Target:  5'- gCCCC-CCGCagcagCCCCaGGCC-GGGCCc -3'
miRNA:   3'- -GGGGaGGUGa----GGGGcCCGGaUCCGGc -5'
28746 5' -64.9 NC_006146.1 + 76088 0.74 0.188256
Target:  5'- aCCUUCCuggugggcaAC-CCCCGGGCCUcGGCCu -3'
miRNA:   3'- gGGGAGG---------UGaGGGGCCCGGAuCCGGc -5'
28746 5' -64.9 NC_006146.1 + 74247 0.74 0.201777
Target:  5'- gCCCUgcgcggCCGuCUCCCCGGGCU--GGCCa -3'
miRNA:   3'- -GGGGa-----GGU-GAGGGGCCCGGauCCGGc -5'
28746 5' -64.9 NC_006146.1 + 73540 0.7 0.347885
Target:  5'- gCCaggCUCCggaGCUCCCCGGGCgggugguuguGGCCGg -3'
miRNA:   3'- -GGg--GAGG---UGAGGGGCCCGgau-------CCGGC- -5'
28746 5' -64.9 NC_006146.1 + 73035 0.68 0.46037
Target:  5'- gCCCUcguUCCACggCCCgGGGUCggcGGCCc -3'
miRNA:   3'- -GGGG---AGGUGa-GGGgCCCGGau-CCGGc -5'
28746 5' -64.9 NC_006146.1 + 71904 0.68 0.426698
Target:  5'- aCCCUCCugcgcgcggcCUCugaCCUGGGCCUgaccuGGGCCu -3'
miRNA:   3'- gGGGAGGu---------GAG---GGGCCCGGA-----UCCGGc -5'
28746 5' -64.9 NC_006146.1 + 71854 0.7 0.34216
Target:  5'- aCCCCgaCAC-CCgCCGGGCCcugggGGGCCu -3'
miRNA:   3'- -GGGGagGUGaGG-GGCCCGGa----UCCGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.