miRNA display CGI


Results 61 - 80 of 85 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28747 3' -56.9 NC_006146.1 + 144690 0.66 0.884525
Target:  5'- cGGGCGCCcuugcCUgGAGGCgagacuGGGCggcUGCg -3'
miRNA:   3'- uCCCGUGGau---GAgCUCCG------UCCGa--AUG- -5'
28747 3' -56.9 NC_006146.1 + 86577 0.68 0.768254
Target:  5'- aGGGGCAgCUggGCUUGAGGggcagcUGGGCUUGa -3'
miRNA:   3'- -UCCCGUgGA--UGAGCUCC------GUCCGAAUg -5'
28747 3' -56.9 NC_006146.1 + 86543 0.68 0.768254
Target:  5'- aGGGGCAgCUggGCUUGAGGggcagcUGGGCUUGa -3'
miRNA:   3'- -UCCCGUgGA--UGAGCUCC------GUCCGAAUg -5'
28747 3' -56.9 NC_006146.1 + 92131 0.76 0.34158
Target:  5'- uGGGGCugCUGCUgGGGGgCGGGCccgGCc -3'
miRNA:   3'- -UCCCGugGAUGAgCUCC-GUCCGaa-UG- -5'
28747 3' -56.9 NC_006146.1 + 92161 0.76 0.34158
Target:  5'- uGGGGCugCUGCUgGGGGgCGGGCccgGCc -3'
miRNA:   3'- -UCCCGugGAUGAgCUCC-GUCCGaa-UG- -5'
28747 3' -56.9 NC_006146.1 + 92191 0.76 0.34158
Target:  5'- uGGGGCugCUGCUgGGGGgCGGGCccgGCc -3'
miRNA:   3'- -UCCCGugGAUGAgCUCC-GUCCGaa-UG- -5'
28747 3' -56.9 NC_006146.1 + 92221 0.76 0.34158
Target:  5'- uGGGGCugCUGCUgGGGGgCGGGCccgGCc -3'
miRNA:   3'- -UCCCGugGAUGAgCUCC-GUCCGaa-UG- -5'
28747 3' -56.9 NC_006146.1 + 92281 0.76 0.34158
Target:  5'- uGGGGCugCUGCUgGGGGgCGGGCccgGCc -3'
miRNA:   3'- -UCCCGugGAUGAgCUCC-GUCCGaa-UG- -5'
28747 3' -56.9 NC_006146.1 + 92311 0.76 0.34158
Target:  5'- uGGGGCugCUGCUgGGGGgCGGGCccgGCc -3'
miRNA:   3'- -UCCCGugGAUGAgCUCC-GUCCGaa-UG- -5'
28747 3' -56.9 NC_006146.1 + 11848 0.73 0.507931
Target:  5'- cGGGC-CCUgcuucucggGCUUGGGGCGGGCccgACg -3'
miRNA:   3'- uCCCGuGGA---------UGAGCUCCGUCCGaa-UG- -5'
28747 3' -56.9 NC_006146.1 + 84945 0.72 0.567429
Target:  5'- cGGaGGCGCCUcGCUUGGGGgGGGCa--- -3'
miRNA:   3'- -UC-CCGUGGA-UGAGCUCCgUCCGaaug -5'
28747 3' -56.9 NC_006146.1 + 103392 0.71 0.618301
Target:  5'- uAGGGCGCCUGC-CaGuGGgGGGCgucgUGCu -3'
miRNA:   3'- -UCCCGUGGAUGaG-CuCCgUCCGa---AUG- -5'
28747 3' -56.9 NC_006146.1 + 123707 0.7 0.638774
Target:  5'- cAGGG-GCCUggcGCUCGGGGCGgcGGCggGCu -3'
miRNA:   3'- -UCCCgUGGA---UGAGCUCCGU--CCGaaUG- -5'
28747 3' -56.9 NC_006146.1 + 110865 0.7 0.649007
Target:  5'- gAGGGaCGCUgcgucucggGCUCGGGcGCAGGCggggACg -3'
miRNA:   3'- -UCCC-GUGGa--------UGAGCUC-CGUCCGaa--UG- -5'
28747 3' -56.9 NC_006146.1 + 20127 0.69 0.699798
Target:  5'- -cGGCACCUGCUgGGGGCcaaaaaggAGGacgUGCa -3'
miRNA:   3'- ucCCGUGGAUGAgCUCCG--------UCCga-AUG- -5'
28747 3' -56.9 NC_006146.1 + 88912 0.69 0.739459
Target:  5'- uAGGGCACUgggGCUCuuguGGCugAGGCUgagGCu -3'
miRNA:   3'- -UCCCGUGGa--UGAGcu--CCG--UCCGAa--UG- -5'
28747 3' -56.9 NC_006146.1 + 85306 0.69 0.739459
Target:  5'- -cGGUGCCaGCUucCGAGGCGGGCggcUGCc -3'
miRNA:   3'- ucCCGUGGaUGA--GCUCCGUCCGa--AUG- -5'
28747 3' -56.9 NC_006146.1 + 95537 0.69 0.739459
Target:  5'- uGGGGC-CCaGCUUGGGGCAGcGUaugACa -3'
miRNA:   3'- -UCCCGuGGaUGAGCUCCGUC-CGaa-UG- -5'
28747 3' -56.9 NC_006146.1 + 20963 0.68 0.749163
Target:  5'- uGGGCGCCccucaACccCGAgGGCAGGC-UACg -3'
miRNA:   3'- uCCCGUGGa----UGa-GCU-CCGUCCGaAUG- -5'
28747 3' -56.9 NC_006146.1 + 86509 0.68 0.768254
Target:  5'- aGGGGCAgCUggGCUUGAGGggcaacUGGGCUUGa -3'
miRNA:   3'- -UCCCGUgGA--UGAGCUCC------GUCCGAAUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.