miRNA display CGI


Results 61 - 80 of 85 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28747 3' -56.9 NC_006146.1 + 50178 0.67 0.830785
Target:  5'- gGGGGCGuuUgcACUUGcGGCGGGCUc-- -3'
miRNA:   3'- -UCCCGUggA--UGAGCuCCGUCCGAaug -5'
28747 3' -56.9 NC_006146.1 + 3981 0.67 0.83906
Target:  5'- gAGGGCACCaaguggccaUGgUCGAGGCGcugaugaacgcGGCcuUUGCc -3'
miRNA:   3'- -UCCCGUGG---------AUgAGCUCCGU-----------CCG--AAUG- -5'
28747 3' -56.9 NC_006146.1 + 30367 0.66 0.847147
Target:  5'- uGGGGUGCCguccCUCccaGGGCuAGGUUUGCu -3'
miRNA:   3'- -UCCCGUGGau--GAGc--UCCG-UCCGAAUG- -5'
28747 3' -56.9 NC_006146.1 + 58107 0.66 0.847147
Target:  5'- uGGGGCGCa-ACggGAGGCAGGagaGCg -3'
miRNA:   3'- -UCCCGUGgaUGagCUCCGUCCgaaUG- -5'
28747 3' -56.9 NC_006146.1 + 167309 0.66 0.847147
Target:  5'- -cGGCGCCUGCagggGGGGCcGGCgggGCg -3'
miRNA:   3'- ucCCGUGGAUGag--CUCCGuCCGaa-UG- -5'
28747 3' -56.9 NC_006146.1 + 12852 0.7 0.659226
Target:  5'- aGGaGGCGCCUGgggCGAGGCuggguGGCUggGCa -3'
miRNA:   3'- -UC-CCGUGGAUga-GCUCCGu----CCGAa-UG- -5'
28747 3' -56.9 NC_006146.1 + 28595 0.7 0.638774
Target:  5'- cGGGCGCCUcCUCGGguucagccgcuGGCuGGCUcUGCc -3'
miRNA:   3'- uCCCGUGGAuGAGCU-----------CCGuCCGA-AUG- -5'
28747 3' -56.9 NC_006146.1 + 137828 0.74 0.441214
Target:  5'- cGGuGCACCUggaaggcagggggGCUCGGGGUGGGUggGCg -3'
miRNA:   3'- uCC-CGUGGA-------------UGAGCUCCGUCCGaaUG- -5'
28747 3' -56.9 NC_006146.1 + 15931 0.72 0.537396
Target:  5'- aGGaGGCGCCUGggCGAGGCuggguGGCUggGCa -3'
miRNA:   3'- -UC-CCGUGGAUgaGCUCCGu----CCGAa-UG- -5'
28747 3' -56.9 NC_006146.1 + 19008 0.72 0.537396
Target:  5'- aGGaGGCGCCUGggCGAGGCuggguGGCUggGCa -3'
miRNA:   3'- -UC-CCGUGGAUgaGCUCCGu----CCGAa-UG- -5'
28747 3' -56.9 NC_006146.1 + 22086 0.72 0.537396
Target:  5'- aGGaGGCGCCUGggCGAGGCuggguGGCUggGCa -3'
miRNA:   3'- -UC-CCGUGGAUgaGCUCCGu----CCGAa-UG- -5'
28747 3' -56.9 NC_006146.1 + 25164 0.72 0.537396
Target:  5'- aGGaGGCGCCUGggCGAGGCuggguGGCUggGCa -3'
miRNA:   3'- -UC-CCGUGGAUgaGCUCCGu----CCGAa-UG- -5'
28747 3' -56.9 NC_006146.1 + 28242 0.72 0.537396
Target:  5'- aGGaGGCGCCUGggCGAGGCuggguGGCUggGCa -3'
miRNA:   3'- -UC-CCGUGGAUgaGCUCCGu----CCGAa-UG- -5'
28747 3' -56.9 NC_006146.1 + 139168 0.72 0.567429
Target:  5'- gGGGGCGCCUG--UGAGGC-GGCUg-- -3'
miRNA:   3'- -UCCCGUGGAUgaGCUCCGuCCGAaug -5'
28747 3' -56.9 NC_006146.1 + 68157 0.71 0.618301
Target:  5'- aGGGGCuGCCUcCUCcccGGGCAGGCgcaGCg -3'
miRNA:   3'- -UCCCG-UGGAuGAGc--UCCGUCCGaa-UG- -5'
28747 3' -56.9 NC_006146.1 + 13205 0.7 0.638774
Target:  5'- cGGGCGCCUcCUCGGguucagccgcuGGCuGGCUcUGCc -3'
miRNA:   3'- uCCCGUGGAuGAGCU-----------CCGuCCGA-AUG- -5'
28747 3' -56.9 NC_006146.1 + 16283 0.7 0.638774
Target:  5'- cGGGCGCCUcCUCGGguucagccgcuGGCuGGCUcUGCc -3'
miRNA:   3'- uCCCGUGGAuGAGCU-----------CCGuCCGA-AUG- -5'
28747 3' -56.9 NC_006146.1 + 19361 0.7 0.638774
Target:  5'- cGGGCGCCUcCUCGGguucagccgcuGGCuGGCUcUGCc -3'
miRNA:   3'- uCCCGUGGAuGAGCU-----------CCGuCCGA-AUG- -5'
28747 3' -56.9 NC_006146.1 + 22439 0.7 0.638774
Target:  5'- cGGGCGCCUcCUCGGguucagccgcuGGCuGGCUcUGCc -3'
miRNA:   3'- uCCCGUGGAuGAGCU-----------CCGuCCGA-AUG- -5'
28747 3' -56.9 NC_006146.1 + 25517 0.7 0.638774
Target:  5'- cGGGCGCCUcCUCGGguucagccgcuGGCuGGCUcUGCc -3'
miRNA:   3'- uCCCGUGGAuGAGCU-----------CCGuCCGA-AUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.