Results 1 - 20 of 85 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28747 | 3' | -56.9 | NC_006146.1 | + | 33998 | 0.75 | 0.393098 |
Target: 5'- cGGuGCACCUggaaggcagggggggGgUCGGGGCAGGCggGCg -3' miRNA: 3'- uCC-CGUGGA---------------UgAGCUCCGUCCGaaUG- -5' |
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28747 | 3' | -56.9 | NC_006146.1 | + | 40741 | 0.69 | 0.729661 |
Target: 5'- cGGGC-CCgUGCUUGGGGCuGGCcacggACg -3' miRNA: 3'- uCCCGuGG-AUGAGCUCCGuCCGaa---UG- -5' |
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28747 | 3' | -56.9 | NC_006146.1 | + | 39276 | 0.68 | 0.749163 |
Target: 5'- uGGGCcCCggACUCGAgacGGCAGGUggcaGCa -3' miRNA: 3'- uCCCGuGGa-UGAGCU---CCGUCCGaa--UG- -5' |
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28747 | 3' | -56.9 | NC_006146.1 | + | 51738 | 0.66 | 0.884525 |
Target: 5'- aGGcGGCGCCc---CGAGGUGGGCUucuugUGCg -3' miRNA: 3'- -UC-CCGUGGaugaGCUCCGUCCGA-----AUG- -5' |
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28747 | 3' | -56.9 | NC_006146.1 | + | 22086 | 0.72 | 0.537396 |
Target: 5'- aGGaGGCGCCUGggCGAGGCuggguGGCUggGCa -3' miRNA: 3'- -UC-CCGUGGAUgaGCUCCGu----CCGAa-UG- -5' |
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28747 | 3' | -56.9 | NC_006146.1 | + | 25164 | 0.72 | 0.537396 |
Target: 5'- aGGaGGCGCCUGggCGAGGCuggguGGCUggGCa -3' miRNA: 3'- -UC-CCGUGGAUgaGCUCCGu----CCGAa-UG- -5' |
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28747 | 3' | -56.9 | NC_006146.1 | + | 139168 | 0.72 | 0.567429 |
Target: 5'- gGGGGCGCCUG--UGAGGC-GGCUg-- -3' miRNA: 3'- -UCCCGUGGAUgaGCUCCGuCCGAaug -5' |
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28747 | 3' | -56.9 | NC_006146.1 | + | 68157 | 0.71 | 0.618301 |
Target: 5'- aGGGGCuGCCUcCUCcccGGGCAGGCgcaGCg -3' miRNA: 3'- -UCCCG-UGGAuGAGc--UCCGUCCGaa-UG- -5' |
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28747 | 3' | -56.9 | NC_006146.1 | + | 19361 | 0.7 | 0.638774 |
Target: 5'- cGGGCGCCUcCUCGGguucagccgcuGGCuGGCUcUGCc -3' miRNA: 3'- uCCCGUGGAuGAGCU-----------CCGuCCGA-AUG- -5' |
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28747 | 3' | -56.9 | NC_006146.1 | + | 47078 | 0.7 | 0.659226 |
Target: 5'- gGGGGCGCCUgACgaaGAcGGUGGGC-UGCg -3' miRNA: 3'- -UCCCGUGGA-UGag-CU-CCGUCCGaAUG- -5' |
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28747 | 3' | -56.9 | NC_006146.1 | + | 25517 | 0.7 | 0.638774 |
Target: 5'- cGGGCGCCUcCUCGGguucagccgcuGGCuGGCUcUGCc -3' miRNA: 3'- uCCCGUGGAuGAGCU-----------CCGuCCGA-AUG- -5' |
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28747 | 3' | -56.9 | NC_006146.1 | + | 16283 | 0.7 | 0.638774 |
Target: 5'- cGGGCGCCUcCUCGGguucagccgcuGGCuGGCUcUGCc -3' miRNA: 3'- uCCCGUGGAuGAGCU-----------CCGuCCGA-AUG- -5' |
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28747 | 3' | -56.9 | NC_006146.1 | + | 137828 | 0.74 | 0.441214 |
Target: 5'- cGGuGCACCUggaaggcagggggGCUCGGGGUGGGUggGCg -3' miRNA: 3'- uCC-CGUGGA-------------UGAGCUCCGUCCGaaUG- -5' |
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28747 | 3' | -56.9 | NC_006146.1 | + | 28595 | 0.7 | 0.638774 |
Target: 5'- cGGGCGCCUcCUCGGguucagccgcuGGCuGGCUcUGCc -3' miRNA: 3'- uCCCGUGGAuGAGCU-----------CCGuCCGA-AUG- -5' |
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28747 | 3' | -56.9 | NC_006146.1 | + | 15931 | 0.72 | 0.537396 |
Target: 5'- aGGaGGCGCCUGggCGAGGCuggguGGCUggGCa -3' miRNA: 3'- -UC-CCGUGGAUgaGCUCCGu----CCGAa-UG- -5' |
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28747 | 3' | -56.9 | NC_006146.1 | + | 13205 | 0.7 | 0.638774 |
Target: 5'- cGGGCGCCUcCUCGGguucagccgcuGGCuGGCUcUGCc -3' miRNA: 3'- uCCCGUGGAuGAGCU-----------CCGuCCGA-AUG- -5' |
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28747 | 3' | -56.9 | NC_006146.1 | + | 12852 | 0.7 | 0.659226 |
Target: 5'- aGGaGGCGCCUGgggCGAGGCuggguGGCUggGCa -3' miRNA: 3'- -UC-CCGUGGAUga-GCUCCGu----CCGAa-UG- -5' |
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28747 | 3' | -56.9 | NC_006146.1 | + | 72564 | 0.69 | 0.729661 |
Target: 5'- uGGGCGCCgg--CGuGGUgcugGGGCUUGCc -3' miRNA: 3'- uCCCGUGGaugaGCuCCG----UCCGAAUG- -5' |
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28747 | 3' | -56.9 | NC_006146.1 | + | 19008 | 0.72 | 0.537396 |
Target: 5'- aGGaGGCGCCUGggCGAGGCuggguGGCUggGCa -3' miRNA: 3'- -UC-CCGUGGAUgaGCUCCGu----CCGAa-UG- -5' |
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28747 | 3' | -56.9 | NC_006146.1 | + | 28242 | 0.72 | 0.537396 |
Target: 5'- aGGaGGCGCCUGggCGAGGCuggguGGCUggGCa -3' miRNA: 3'- -UC-CCGUGGAUgaGCUCCGu----CCGAa-UG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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