miRNA display CGI


Results 21 - 40 of 85 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28747 3' -56.9 NC_006146.1 + 33998 0.75 0.393098
Target:  5'- cGGuGCACCUggaaggcagggggggGgUCGGGGCAGGCggGCg -3'
miRNA:   3'- uCC-CGUGGA---------------UgAGCUCCGUCCGaaUG- -5'
28747 3' -56.9 NC_006146.1 + 39276 0.68 0.749163
Target:  5'- uGGGCcCCggACUCGAgacGGCAGGUggcaGCa -3'
miRNA:   3'- uCCCGuGGa-UGAGCU---CCGUCCGaa--UG- -5'
28747 3' -56.9 NC_006146.1 + 40025 0.67 0.830785
Target:  5'- cAGGGgGCCUGCUgGGGGCcguaGCcgACu -3'
miRNA:   3'- -UCCCgUGGAUGAgCUCCGuc--CGaaUG- -5'
28747 3' -56.9 NC_006146.1 + 40741 0.69 0.729661
Target:  5'- cGGGC-CCgUGCUUGGGGCuGGCcacggACg -3'
miRNA:   3'- uCCCGuGG-AUGAGCUCCGuCCGaa---UG- -5'
28747 3' -56.9 NC_006146.1 + 42831 0.67 0.830785
Target:  5'- --cGCACCUGCaUGAGGCcgguGGuCUUGCg -3'
miRNA:   3'- uccCGUGGAUGaGCUCCGu---CC-GAAUG- -5'
28747 3' -56.9 NC_006146.1 + 47078 0.7 0.659226
Target:  5'- gGGGGCGCCUgACgaaGAcGGUGGGC-UGCg -3'
miRNA:   3'- -UCCCGUGGA-UGag-CU-CCGUCCGaAUG- -5'
28747 3' -56.9 NC_006146.1 + 48625 0.68 0.768254
Target:  5'- cGGGUGCCg--UgGGGGCGGGCUccggGCg -3'
miRNA:   3'- uCCCGUGGaugAgCUCCGUCCGAa---UG- -5'
28747 3' -56.9 NC_006146.1 + 50178 0.67 0.830785
Target:  5'- gGGGGCGuuUgcACUUGcGGCGGGCUc-- -3'
miRNA:   3'- -UCCCGUggA--UGAGCuCCGUCCGAaug -5'
28747 3' -56.9 NC_006146.1 + 51738 0.66 0.884525
Target:  5'- aGGcGGCGCCc---CGAGGUGGGCUucuugUGCg -3'
miRNA:   3'- -UC-CCGUGGaugaGCUCCGUCCGA-----AUG- -5'
28747 3' -56.9 NC_006146.1 + 51816 0.68 0.795957
Target:  5'- gAGGGCgGCCUcCUCgggaagcgccgGAGGUGGGC-UGCg -3'
miRNA:   3'- -UCCCG-UGGAuGAG-----------CUCCGUCCGaAUG- -5'
28747 3' -56.9 NC_006146.1 + 57274 0.66 0.877476
Target:  5'- gGGGGCGagacaacauCCaGCgcCGGGGCAGGCg--- -3'
miRNA:   3'- -UCCCGU---------GGaUGa-GCUCCGUCCGaaug -5'
28747 3' -56.9 NC_006146.1 + 58107 0.66 0.847147
Target:  5'- uGGGGCGCa-ACggGAGGCAGGagaGCg -3'
miRNA:   3'- -UCCCGUGgaUGagCUCCGUCCgaaUG- -5'
28747 3' -56.9 NC_006146.1 + 60599 0.68 0.784102
Target:  5'- cAGGGCggcgaugaacGCCUACgcCGAGGCcaucauggcagacgGGGCUcUGCa -3'
miRNA:   3'- -UCCCG----------UGGAUGa-GCUCCG--------------UCCGA-AUG- -5'
28747 3' -56.9 NC_006146.1 + 61227 0.66 0.862727
Target:  5'- cGGGUACCggACUgCGAGGU-GGUcUGCu -3'
miRNA:   3'- uCCCGUGGa-UGA-GCUCCGuCCGaAUG- -5'
28747 3' -56.9 NC_006146.1 + 68157 0.71 0.618301
Target:  5'- aGGGGCuGCCUcCUCcccGGGCAGGCgcaGCg -3'
miRNA:   3'- -UCCCG-UGGAuGAGc--UCCGUCCGaa-UG- -5'
28747 3' -56.9 NC_006146.1 + 72564 0.69 0.729661
Target:  5'- uGGGCGCCgg--CGuGGUgcugGGGCUUGCc -3'
miRNA:   3'- uCCCGUGGaugaGCuCCG----UCCGAAUG- -5'
28747 3' -56.9 NC_006146.1 + 75808 0.68 0.795957
Target:  5'- cGGGCGCCgccUUCGAGGCccugcGGGaCaUGCa -3'
miRNA:   3'- uCCCGUGGau-GAGCUCCG-----UCC-GaAUG- -5'
28747 3' -56.9 NC_006146.1 + 77894 0.66 0.855038
Target:  5'- cGGaGCACgCUGCUUaacaggcgcaGGGGCGGGCg--- -3'
miRNA:   3'- uCC-CGUG-GAUGAG----------CUCCGUCCGaaug -5'
28747 3' -56.9 NC_006146.1 + 78950 0.66 0.862727
Target:  5'- -aGGCuCCUAaaaGGGGCAGGCcUGCc -3'
miRNA:   3'- ucCCGuGGAUgagCUCCGUCCGaAUG- -5'
28747 3' -56.9 NC_006146.1 + 84945 0.72 0.567429
Target:  5'- cGGaGGCGCCUcGCUUGGGGgGGGCa--- -3'
miRNA:   3'- -UC-CCGUGGA-UGAGCUCCgUCCGaaug -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.