miRNA display CGI


Results 1 - 20 of 134 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28747 5' -59.9 NC_006146.1 + 159521 0.66 0.77669
Target:  5'- gGGgccaauGGCCucgaguuuuuucauuGGCCCGAGGGcuUCGCUc -3'
miRNA:   3'- aCCau----UCGGu--------------CCGGGCUCCC--AGUGGa -5'
28747 5' -59.9 NC_006146.1 + 91997 0.66 0.775783
Target:  5'- cUGGcGGGCCcGGCCUGGGGcugCugCUg -3'
miRNA:   3'- -ACCaUUCGGuCCGGGCUCCca-GugGA- -5'
28747 5' -59.9 NC_006146.1 + 25294 0.66 0.775783
Target:  5'- aGaGUcGGCCuAGGCCCGgggaguggagGGGGaUCGCCc -3'
miRNA:   3'- aC-CAuUCGG-UCCGGGC----------UCCC-AGUGGa -5'
28747 5' -59.9 NC_006146.1 + 28372 0.66 0.775783
Target:  5'- aGaGUcGGCCuAGGCCCGgggaguggagGGGGaUCGCCc -3'
miRNA:   3'- aC-CAuUCGG-UCCGGGC----------UCCC-AGUGGa -5'
28747 5' -59.9 NC_006146.1 + 22216 0.66 0.775783
Target:  5'- aGaGUcGGCCuAGGCCCGgggaguggagGGGGaUCGCCc -3'
miRNA:   3'- aC-CAuUCGG-UCCGGGC----------UCCC-AGUGGa -5'
28747 5' -59.9 NC_006146.1 + 16060 0.66 0.775783
Target:  5'- aGaGUcGGCCuAGGCCCGgggaguggagGGGGaUCGCCc -3'
miRNA:   3'- aC-CAuUCGG-UCCGGGC----------UCCC-AGUGGa -5'
28747 5' -59.9 NC_006146.1 + 19138 0.66 0.775783
Target:  5'- aGaGUcGGCCuAGGCCCGgggaguggagGGGGaUCGCCc -3'
miRNA:   3'- aC-CAuUCGG-UCCGGGC----------UCCC-AGUGGa -5'
28747 5' -59.9 NC_006146.1 + 12982 0.66 0.775783
Target:  5'- aGaGUcGGCCuAGGCCCGgggaguggagGGGGaUCGCCc -3'
miRNA:   3'- aC-CAuUCGG-UCCGGGC----------UCCC-AGUGGa -5'
28747 5' -59.9 NC_006146.1 + 170194 0.66 0.773053
Target:  5'- aGGgcgGGGCCgGGGCCUGgcgggggccagcgcGGGGUC-CCg -3'
miRNA:   3'- aCCa--UUCGG-UCCGGGC--------------UCCCAGuGGa -5'
28747 5' -59.9 NC_006146.1 + 169263 0.66 0.773053
Target:  5'- aGGgcgGGGCCgGGGCCUGgcgggggccagcgcGGGGUC-CCg -3'
miRNA:   3'- aCCa--UUCGG-UCCGGGC--------------UCCCAGuGGa -5'
28747 5' -59.9 NC_006146.1 + 168331 0.66 0.773053
Target:  5'- aGGgcgGGGCCgGGGCCUGgcgggggccagcgcGGGGUC-CCg -3'
miRNA:   3'- aCCa--UUCGG-UCCGGGC--------------UCCCAGuGGa -5'
28747 5' -59.9 NC_006146.1 + 167399 0.66 0.773053
Target:  5'- aGGgcgGGGCCgGGGCCUGgcgggggccagcgcGGGGUC-CCg -3'
miRNA:   3'- aCCa--UUCGG-UCCGGGC--------------UCCCAGuGGa -5'
28747 5' -59.9 NC_006146.1 + 61524 0.66 0.76664
Target:  5'- aGGgaGGCCuccGGuGUCCGGGGGaCGCCc -3'
miRNA:   3'- aCCauUCGG---UC-CGGGCUCCCaGUGGa -5'
28747 5' -59.9 NC_006146.1 + 56506 0.66 0.76664
Target:  5'- ----cAGUCGGGCCgCGGGGucGUCGCCg -3'
miRNA:   3'- accauUCGGUCCGG-GCUCC--CAGUGGa -5'
28747 5' -59.9 NC_006146.1 + 170603 0.66 0.76664
Target:  5'- gUGGcGAgcgcGCCGGGCCCGcccccGGGUCuucCCg -3'
miRNA:   3'- -ACCaUU----CGGUCCGGGCu----CCCAGu--GGa -5'
28747 5' -59.9 NC_006146.1 + 69577 0.66 0.76664
Target:  5'- cUGGUGggggaagauGGCCAGGUCCuGGGG-CAgCg -3'
miRNA:   3'- -ACCAU---------UCGGUCCGGGcUCCCaGUgGa -5'
28747 5' -59.9 NC_006146.1 + 52992 0.66 0.76664
Target:  5'- cGGaccugccGGCCGuGGCCgCGGGGGUCgaugACCa -3'
miRNA:   3'- aCCau-----UCGGU-CCGG-GCUCCCAG----UGGa -5'
28747 5' -59.9 NC_006146.1 + 30246 0.66 0.76572
Target:  5'- cGGaaauuGGCCgcaaaaaGGGCUguaGAGGGUCACCc -3'
miRNA:   3'- aCCau---UCGG-------UCCGGg--CUCCCAGUGGa -5'
28747 5' -59.9 NC_006146.1 + 55816 0.66 0.757384
Target:  5'- aUGaGUAcAGCCAGcGCCUGGGuGGgCACCc -3'
miRNA:   3'- -AC-CAU-UCGGUC-CGGGCUC-CCaGUGGa -5'
28747 5' -59.9 NC_006146.1 + 51571 0.66 0.757384
Target:  5'- cUGGgc-GCCgccgggagGGGCCCGGGGGa-GCCa -3'
miRNA:   3'- -ACCauuCGG--------UCCGGGCUCCCagUGGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.