miRNA display CGI


Results 61 - 80 of 134 are showing below:
Show page:



<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28747 5' -59.9 NC_006146.1 + 110591 0.67 0.719396
Target:  5'- cGGUccGGGUCAGGUCgGuGGGGUC-CCa -3'
miRNA:   3'- aCCA--UUCGGUCCGGgC-UCCCAGuGGa -5'
28747 5' -59.9 NC_006146.1 + 12837 0.67 0.719396
Target:  5'- cGGc-GGCCGGaCCCGAGGaGgCGCCUg -3'
miRNA:   3'- aCCauUCGGUCcGGGCUCC-CaGUGGA- -5'
28747 5' -59.9 NC_006146.1 + 15916 0.67 0.719396
Target:  5'- cGGc-GGCCGGaCCCGAGGaGgCGCCUg -3'
miRNA:   3'- aCCauUCGGUCcGGGCUCC-CaGUGGA- -5'
28747 5' -59.9 NC_006146.1 + 18993 0.67 0.719396
Target:  5'- cGGc-GGCCGGaCCCGAGGaGgCGCCUg -3'
miRNA:   3'- aCCauUCGGUCcGGGCUCC-CaGUGGA- -5'
28747 5' -59.9 NC_006146.1 + 22071 0.67 0.719396
Target:  5'- cGGc-GGCCGGaCCCGAGGaGgCGCCUg -3'
miRNA:   3'- aCCauUCGGUCcGGGCUCC-CaGUGGA- -5'
28747 5' -59.9 NC_006146.1 + 25149 0.67 0.719396
Target:  5'- cGGc-GGCCGGaCCCGAGGaGgCGCCUg -3'
miRNA:   3'- aCCauUCGGUCcGGGCUCC-CaGUGGA- -5'
28747 5' -59.9 NC_006146.1 + 28227 0.67 0.719396
Target:  5'- cGGc-GGCCGGaCCCGAGGaGgCGCCUg -3'
miRNA:   3'- aCCauUCGGUCcGGGCUCC-CaGUGGA- -5'
28747 5' -59.9 NC_006146.1 + 116395 0.68 0.620612
Target:  5'- aGGaggGAGCgGGGCCCuGGGGaGUCuCCUc -3'
miRNA:   3'- aCCa--UUCGgUCCGGG-CUCC-CAGuGGA- -5'
28747 5' -59.9 NC_006146.1 + 112511 0.68 0.620612
Target:  5'- cGGUccagGGGCCgguggaGGGCCU--GGGUCACCUc -3'
miRNA:   3'- aCCA----UUCGG------UCCGGGcuCCCAGUGGA- -5'
28747 5' -59.9 NC_006146.1 + 88337 0.68 0.617623
Target:  5'- aUGG-AGGCCguuGGGCCCaGGGGGUUaaaggaggcccauaACCUg -3'
miRNA:   3'- -ACCaUUCGG---UCCGGG-CUCCCAG--------------UGGA- -5'
28747 5' -59.9 NC_006146.1 + 114817 0.68 0.610654
Target:  5'- cUGGU-GGCCGacaccuacuuGGCCCGGuGGGaCGCCUu -3'
miRNA:   3'- -ACCAuUCGGU----------CCGGGCU-CCCaGUGGA- -5'
28747 5' -59.9 NC_006146.1 + 15960 0.68 0.630577
Target:  5'- gGGcAGGCCggucucGGGUCUGGGGGUCugUg -3'
miRNA:   3'- aCCaUUCGG------UCCGGGCUCCCAGugGa -5'
28747 5' -59.9 NC_006146.1 + 126062 0.68 0.630577
Target:  5'- gGGUAGGguaaaCGGGCaCGAGGGgCGCCg -3'
miRNA:   3'- aCCAUUCg----GUCCGgGCUCCCaGUGGa -5'
28747 5' -59.9 NC_006146.1 + 156718 0.68 0.630577
Target:  5'- -----cGuCCAGGCuCCGGGGGUCcaGCCUg -3'
miRNA:   3'- accauuC-GGUCCG-GGCUCCCAG--UGGA- -5'
28747 5' -59.9 NC_006146.1 + 167181 0.68 0.640544
Target:  5'- cGGgaGGCCGGcgcgcGCCCG-GGGUC-CCg -3'
miRNA:   3'- aCCauUCGGUC-----CGGGCuCCCAGuGGa -5'
28747 5' -59.9 NC_006146.1 + 168113 0.68 0.640544
Target:  5'- cGGgaGGCCGGcgcgcGCCCG-GGGUC-CCg -3'
miRNA:   3'- aCCauUCGGUC-----CGGGCuCCCAGuGGa -5'
28747 5' -59.9 NC_006146.1 + 169045 0.68 0.640544
Target:  5'- cGGgaGGCCGGcgcgcGCCCG-GGGUC-CCg -3'
miRNA:   3'- aCCauUCGGUC-----CGGGCuCCCAGuGGa -5'
28747 5' -59.9 NC_006146.1 + 169977 0.68 0.640544
Target:  5'- cGGgaGGCCGGcgcgcGCCCG-GGGUC-CCg -3'
miRNA:   3'- aCCauUCGGUC-----CGGGCuCCCAGuGGa -5'
28747 5' -59.9 NC_006146.1 + 12882 0.68 0.649509
Target:  5'- gGGcAGGCCGGGUCUcgggucuGGGGGUCugUg -3'
miRNA:   3'- aCCaUUCGGUCCGGG-------CUCCCAGugGa -5'
28747 5' -59.9 NC_006146.1 + 19037 0.68 0.649509
Target:  5'- gGGcAGGCCGGGUCUcgggucuGGGGGUCugUg -3'
miRNA:   3'- aCCaUUCGGUCCGGG-------CUCCCAGugGa -5'
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home



TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.