Results 61 - 80 of 134 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28747 | 5' | -59.9 | NC_006146.1 | + | 110591 | 0.67 | 0.719396 |
Target: 5'- cGGUccGGGUCAGGUCgGuGGGGUC-CCa -3' miRNA: 3'- aCCA--UUCGGUCCGGgC-UCCCAGuGGa -5' |
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28747 | 5' | -59.9 | NC_006146.1 | + | 12837 | 0.67 | 0.719396 |
Target: 5'- cGGc-GGCCGGaCCCGAGGaGgCGCCUg -3' miRNA: 3'- aCCauUCGGUCcGGGCUCC-CaGUGGA- -5' |
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28747 | 5' | -59.9 | NC_006146.1 | + | 15916 | 0.67 | 0.719396 |
Target: 5'- cGGc-GGCCGGaCCCGAGGaGgCGCCUg -3' miRNA: 3'- aCCauUCGGUCcGGGCUCC-CaGUGGA- -5' |
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28747 | 5' | -59.9 | NC_006146.1 | + | 18993 | 0.67 | 0.719396 |
Target: 5'- cGGc-GGCCGGaCCCGAGGaGgCGCCUg -3' miRNA: 3'- aCCauUCGGUCcGGGCUCC-CaGUGGA- -5' |
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28747 | 5' | -59.9 | NC_006146.1 | + | 22071 | 0.67 | 0.719396 |
Target: 5'- cGGc-GGCCGGaCCCGAGGaGgCGCCUg -3' miRNA: 3'- aCCauUCGGUCcGGGCUCC-CaGUGGA- -5' |
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28747 | 5' | -59.9 | NC_006146.1 | + | 25149 | 0.67 | 0.719396 |
Target: 5'- cGGc-GGCCGGaCCCGAGGaGgCGCCUg -3' miRNA: 3'- aCCauUCGGUCcGGGCUCC-CaGUGGA- -5' |
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28747 | 5' | -59.9 | NC_006146.1 | + | 28227 | 0.67 | 0.719396 |
Target: 5'- cGGc-GGCCGGaCCCGAGGaGgCGCCUg -3' miRNA: 3'- aCCauUCGGUCcGGGCUCC-CaGUGGA- -5' |
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28747 | 5' | -59.9 | NC_006146.1 | + | 116395 | 0.68 | 0.620612 |
Target: 5'- aGGaggGAGCgGGGCCCuGGGGaGUCuCCUc -3' miRNA: 3'- aCCa--UUCGgUCCGGG-CUCC-CAGuGGA- -5' |
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28747 | 5' | -59.9 | NC_006146.1 | + | 112511 | 0.68 | 0.620612 |
Target: 5'- cGGUccagGGGCCgguggaGGGCCU--GGGUCACCUc -3' miRNA: 3'- aCCA----UUCGG------UCCGGGcuCCCAGUGGA- -5' |
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28747 | 5' | -59.9 | NC_006146.1 | + | 88337 | 0.68 | 0.617623 |
Target: 5'- aUGG-AGGCCguuGGGCCCaGGGGGUUaaaggaggcccauaACCUg -3' miRNA: 3'- -ACCaUUCGG---UCCGGG-CUCCCAG--------------UGGA- -5' |
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28747 | 5' | -59.9 | NC_006146.1 | + | 114817 | 0.68 | 0.610654 |
Target: 5'- cUGGU-GGCCGacaccuacuuGGCCCGGuGGGaCGCCUu -3' miRNA: 3'- -ACCAuUCGGU----------CCGGGCU-CCCaGUGGA- -5' |
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28747 | 5' | -59.9 | NC_006146.1 | + | 15960 | 0.68 | 0.630577 |
Target: 5'- gGGcAGGCCggucucGGGUCUGGGGGUCugUg -3' miRNA: 3'- aCCaUUCGG------UCCGGGCUCCCAGugGa -5' |
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28747 | 5' | -59.9 | NC_006146.1 | + | 126062 | 0.68 | 0.630577 |
Target: 5'- gGGUAGGguaaaCGGGCaCGAGGGgCGCCg -3' miRNA: 3'- aCCAUUCg----GUCCGgGCUCCCaGUGGa -5' |
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28747 | 5' | -59.9 | NC_006146.1 | + | 156718 | 0.68 | 0.630577 |
Target: 5'- -----cGuCCAGGCuCCGGGGGUCcaGCCUg -3' miRNA: 3'- accauuC-GGUCCG-GGCUCCCAG--UGGA- -5' |
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28747 | 5' | -59.9 | NC_006146.1 | + | 167181 | 0.68 | 0.640544 |
Target: 5'- cGGgaGGCCGGcgcgcGCCCG-GGGUC-CCg -3' miRNA: 3'- aCCauUCGGUC-----CGGGCuCCCAGuGGa -5' |
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28747 | 5' | -59.9 | NC_006146.1 | + | 168113 | 0.68 | 0.640544 |
Target: 5'- cGGgaGGCCGGcgcgcGCCCG-GGGUC-CCg -3' miRNA: 3'- aCCauUCGGUC-----CGGGCuCCCAGuGGa -5' |
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28747 | 5' | -59.9 | NC_006146.1 | + | 169045 | 0.68 | 0.640544 |
Target: 5'- cGGgaGGCCGGcgcgcGCCCG-GGGUC-CCg -3' miRNA: 3'- aCCauUCGGUC-----CGGGCuCCCAGuGGa -5' |
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28747 | 5' | -59.9 | NC_006146.1 | + | 169977 | 0.68 | 0.640544 |
Target: 5'- cGGgaGGCCGGcgcgcGCCCG-GGGUC-CCg -3' miRNA: 3'- aCCauUCGGUC-----CGGGCuCCCAGuGGa -5' |
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28747 | 5' | -59.9 | NC_006146.1 | + | 12882 | 0.68 | 0.649509 |
Target: 5'- gGGcAGGCCGGGUCUcgggucuGGGGGUCugUg -3' miRNA: 3'- aCCaUUCGGUCCGGG-------CUCCCAGugGa -5' |
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28747 | 5' | -59.9 | NC_006146.1 | + | 19037 | 0.68 | 0.649509 |
Target: 5'- gGGcAGGCCGGGUCUcgggucuGGGGGUCugUg -3' miRNA: 3'- aCCaUUCGGUCCGGG-------CUCCCAGugGa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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