miRNA display CGI


Results 61 - 80 of 103 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28748 5' -53.6 NC_006146.1 + 6013 0.66 0.970962
Target:  5'- gAGGCAAcgaGG-GCCCAGAUCcUCUCc -3'
miRNA:   3'- -UCUGUUuuaCCgCGGGUCUAGcGGAG- -5'
28748 5' -53.6 NC_006146.1 + 161762 0.66 0.966022
Target:  5'- gAGGucCGAGggGGCGCCUGGGcgggggccugaaucuUCGCCUg -3'
miRNA:   3'- -UCU--GUUUuaCCGCGGGUCU---------------AGCGGAg -5'
28748 5' -53.6 NC_006146.1 + 42384 0.66 0.967939
Target:  5'- uGGGCGAGG-GGCGcCCCAGGgccaccccgaCGCCg- -3'
miRNA:   3'- -UCUGUUUUaCCGC-GGGUCUa---------GCGGag -5'
28748 5' -53.6 NC_006146.1 + 23725 0.67 0.940415
Target:  5'- cGGGCGAAggGGCG-CCGGucugCGCCg- -3'
miRNA:   3'- -UCUGUUUuaCCGCgGGUCua--GCGGag -5'
28748 5' -53.6 NC_006146.1 + 110843 0.72 0.720331
Target:  5'- gGGACGAGGcGGCGCCCgaucAGAgggacgcugCGUCUCg -3'
miRNA:   3'- -UCUGUUUUaCCGCGGG----UCUa--------GCGGAG- -5'
28748 5' -53.6 NC_006146.1 + 54248 0.78 0.419496
Target:  5'- uGGACGAGAUGGcCGCCCAGuuuGUgGCCa- -3'
miRNA:   3'- -UCUGUUUUACC-GCGGGUC---UAgCGGag -5'
28748 5' -53.6 NC_006146.1 + 156387 1.11 0.003678
Target:  5'- gAGACAAAAUGGCGCCCAGAUCGCCUCa -3'
miRNA:   3'- -UCUGUUUUACCGCGGGUCUAGCGGAG- -5'
28748 5' -53.6 NC_006146.1 + 153309 1.11 0.003678
Target:  5'- gAGACAAAAUGGCGCCCAGAUCGCCUCa -3'
miRNA:   3'- -UCUGUUUUACCGCGGGUCUAGCGGAG- -5'
28748 5' -53.6 NC_006146.1 + 150231 1.11 0.003678
Target:  5'- gAGACAAAAUGGCGCCCAGAUCGCCUCa -3'
miRNA:   3'- -UCUGUUUUACCGCGGGUCUAGCGGAG- -5'
28748 5' -53.6 NC_006146.1 + 147153 1.11 0.003678
Target:  5'- gAGACAAAAUGGCGCCCAGAUCGCCUCa -3'
miRNA:   3'- -UCUGUUUUACCGCGGGUCUAGCGGAG- -5'
28748 5' -53.6 NC_006146.1 + 144075 1.11 0.003678
Target:  5'- gAGACAAAAUGGCGCCCAGAUCGCCUCa -3'
miRNA:   3'- -UCUGUUUUACCGCGGGUCUAGCGGAG- -5'
28748 5' -53.6 NC_006146.1 + 148901 0.69 0.894342
Target:  5'- gGGACcuGGUGGCGCCCGc--CGgCUCc -3'
miRNA:   3'- -UCUGuuUUACCGCGGGUcuaGCgGAG- -5'
28748 5' -53.6 NC_006146.1 + 145823 0.69 0.894342
Target:  5'- gGGACcuGGUGGCGCCCGc--CGgCUCc -3'
miRNA:   3'- -UCUGuuUUACCGCGGGUcuaGCgGAG- -5'
28748 5' -53.6 NC_006146.1 + 151979 0.69 0.894342
Target:  5'- gGGACcuGGUGGCGCCCGc--CGgCUCc -3'
miRNA:   3'- -UCUGuuUUACCGCGGGUcuaGCgGAG- -5'
28748 5' -53.6 NC_006146.1 + 155057 0.69 0.894342
Target:  5'- gGGACcuGGUGGCGCCCGc--CGgCUCc -3'
miRNA:   3'- -UCUGuuUUACCGCGGGUcuaGCgGAG- -5'
28748 5' -53.6 NC_006146.1 + 20279 0.68 0.90031
Target:  5'- cGugGAGGUGGCcgagaucGCCaAGAUCGCC-Ca -3'
miRNA:   3'- uCugUUUUACCG-------CGGgUCUAGCGGaG- -5'
28748 5' -53.6 NC_006146.1 + 43941 0.68 0.919356
Target:  5'- cGGGCGGGGUcuauccagacGCGCCCGGAgagCGCCa- -3'
miRNA:   3'- -UCUGUUUUAc---------CGCGGGUCUa--GCGGag -5'
28748 5' -53.6 NC_006146.1 + 23040 0.68 0.924994
Target:  5'- cGGAagAAAGUGGCGCCU-GAucugcaacgUCGCCUUc -3'
miRNA:   3'- -UCUg-UUUUACCGCGGGuCU---------AGCGGAG- -5'
28748 5' -53.6 NC_006146.1 + 42709 0.67 0.935523
Target:  5'- cGGCGccgcGGCGCCCcccuGGGcCGCCUCc -3'
miRNA:   3'- uCUGUuuuaCCGCGGG----UCUaGCGGAG- -5'
28748 5' -53.6 NC_006146.1 + 143693 0.67 0.949034
Target:  5'- gGGACAGAGuuagaaguuagccUGGgGCCuCGGAggGCCUg -3'
miRNA:   3'- -UCUGUUUU-------------ACCgCGG-GUCUagCGGAg -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.