miRNA display CGI


Results 81 - 100 of 103 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28748 5' -53.6 NC_006146.1 + 89683 0.67 0.945062
Target:  5'- cGACGGAA-GGgGCCCGGGgaacgGCCUg -3'
miRNA:   3'- uCUGUUUUaCCgCGGGUCUag---CGGAg -5'
28748 5' -53.6 NC_006146.1 + 99817 0.67 0.945062
Target:  5'- cGGCGAGggGGUGUUCGGG--GCCUCg -3'
miRNA:   3'- uCUGUUUuaCCGCGGGUCUagCGGAG- -5'
28748 5' -53.6 NC_006146.1 + 47714 0.67 0.945062
Target:  5'- aGGugGGGAgcaGCGCCCGGAgcUCGUCg- -3'
miRNA:   3'- -UCugUUUUac-CGCGGGUCU--AGCGGag -5'
28748 5' -53.6 NC_006146.1 + 34294 0.67 0.949464
Target:  5'- uGGACGAcgcUGGCGaccccggCCAGcgCGCCUUc -3'
miRNA:   3'- -UCUGUUuu-ACCGCg------GGUCuaGCGGAG- -5'
28748 5' -53.6 NC_006146.1 + 138124 0.67 0.949464
Target:  5'- uGGACGAcgcUGGCGaccccggCCAGcgCGCCUUc -3'
miRNA:   3'- -UCUGUUuu-ACCGCg------GGUCuaGCGGAG- -5'
28748 5' -53.6 NC_006146.1 + 13272 0.67 0.949464
Target:  5'- gGGACc----GGCGCCCcagagccccucGGGUCcGCCUCc -3'
miRNA:   3'- -UCUGuuuuaCCGCGGG-----------UCUAG-CGGAG- -5'
28748 5' -53.6 NC_006146.1 + 16350 0.67 0.949464
Target:  5'- gGGACc----GGCGCCCcagagccccucGGGUCcGCCUCc -3'
miRNA:   3'- -UCUGuuuuaCCGCGGG-----------UCUAG-CGGAG- -5'
28748 5' -53.6 NC_006146.1 + 19428 0.67 0.949464
Target:  5'- gGGACc----GGCGCCCcagagccccucGGGUCcGCCUCc -3'
miRNA:   3'- -UCUGuuuuaCCGCGGG-----------UCUAG-CGGAG- -5'
28748 5' -53.6 NC_006146.1 + 22506 0.67 0.949464
Target:  5'- gGGACc----GGCGCCCcagagccccucGGGUCcGCCUCc -3'
miRNA:   3'- -UCUGuuuuaCCGCGGG-----------UCUAG-CGGAG- -5'
28748 5' -53.6 NC_006146.1 + 25584 0.67 0.949464
Target:  5'- gGGACc----GGCGCCCcagagccccucGGGUCcGCCUCc -3'
miRNA:   3'- -UCUGuuuuaCCGCGGG-----------UCUAG-CGGAG- -5'
28748 5' -53.6 NC_006146.1 + 28662 0.67 0.949464
Target:  5'- gGGACc----GGCGCCCcagagccccucGGGUCcGCCUCc -3'
miRNA:   3'- -UCUGuuuuaCCGCGGG-----------UCUAG-CGGAG- -5'
28748 5' -53.6 NC_006146.1 + 147179 0.67 0.949464
Target:  5'- -cGCAGAccGGCGCCCcu-UCGCC-Cg -3'
miRNA:   3'- ucUGUUUuaCCGCGGGucuAGCGGaG- -5'
28748 5' -53.6 NC_006146.1 + 68925 0.66 0.957548
Target:  5'- uGGACGAGAccggGGCcuggGCCCAGGagaucuccgccgUUGUCUCa -3'
miRNA:   3'- -UCUGUUUUa---CCG----CGGGUCU------------AGCGGAG- -5'
28748 5' -53.6 NC_006146.1 + 70533 0.66 0.957548
Target:  5'- aGGACA---UGGCuGCCCGGcuggcUCGUCUUg -3'
miRNA:   3'- -UCUGUuuuACCG-CGGGUCu----AGCGGAG- -5'
28748 5' -53.6 NC_006146.1 + 101894 0.66 0.9647
Target:  5'- uGGgAAAA-GGCGCCCAGGUCuggaGCUg- -3'
miRNA:   3'- uCUgUUUUaCCGCGGGUCUAG----CGGag -5'
28748 5' -53.6 NC_006146.1 + 160179 0.66 0.9647
Target:  5'- uGGCuc--UGGCuGCCCAGAuuauccUCGCCa- -3'
miRNA:   3'- uCUGuuuuACCG-CGGGUCU------AGCGGag -5'
28748 5' -53.6 NC_006146.1 + 170638 0.66 0.9647
Target:  5'- cGGGCucccccucacGGGUGGCGCgCAGAUCGgCg- -3'
miRNA:   3'- -UCUGu---------UUUACCGCGgGUCUAGCgGag -5'
28748 5' -53.6 NC_006146.1 + 97333 0.66 0.967309
Target:  5'- aGGAgAGGAUGGCGUCCGGccacaaccaccCGCC-Cg -3'
miRNA:   3'- -UCUgUUUUACCGCGGGUCua---------GCGGaG- -5'
28748 5' -53.6 NC_006146.1 + 96830 0.66 0.967626
Target:  5'- gGGACGGGcgGGCagguuggGCCCGcuUCaGCCUCu -3'
miRNA:   3'- -UCUGUUUuaCCG-------CGGGUcuAG-CGGAG- -5'
28748 5' -53.6 NC_006146.1 + 56583 0.66 0.96794
Target:  5'- gGGGCGGccgGGCGCCgAGccCGCCg- -3'
miRNA:   3'- -UCUGUUuuaCCGCGGgUCuaGCGGag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.