miRNA display CGI


Results 1 - 20 of 28 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28749 3' -54.8 NC_006146.1 + 125217 0.66 0.946382
Target:  5'- cGggCGCUCAGAgcccUUCcGCUcccuGGCGGAGAc -3'
miRNA:   3'- -CuaGCGAGUCU----GAGaCGG----UCGUCUCU- -5'
28749 3' -54.8 NC_006146.1 + 40497 0.66 0.941835
Target:  5'- --cCGCgaaaggcagCGGACUCUGCCu-CGGAGGc -3'
miRNA:   3'- cuaGCGa--------GUCUGAGACGGucGUCUCU- -5'
28749 3' -54.8 NC_006146.1 + 110875 0.66 0.937045
Target:  5'- --gCGuCUCGGGCUCggGCgcaGGCGGGGAc -3'
miRNA:   3'- cuaGC-GAGUCUGAGa-CGg--UCGUCUCU- -5'
28749 3' -54.8 NC_006146.1 + 62131 0.66 0.937045
Target:  5'- uAUgGCccUCAGAauUUCUGCCAGCcucAGGGAa -3'
miRNA:   3'- cUAgCG--AGUCU--GAGACGGUCG---UCUCU- -5'
28749 3' -54.8 NC_006146.1 + 123596 0.66 0.937045
Target:  5'- ---aGCUCAaagaaGCUCUuggccaGCCAGCGGAGGu -3'
miRNA:   3'- cuagCGAGUc----UGAGA------CGGUCGUCUCU- -5'
28749 3' -54.8 NC_006146.1 + 128206 0.66 0.932011
Target:  5'- cGggCGCUgggGGGCUCUGCCAGCcucAGGc -3'
miRNA:   3'- -CuaGCGAg--UCUGAGACGGUCGuc-UCU- -5'
28749 3' -54.8 NC_006146.1 + 37914 0.66 0.932011
Target:  5'- --gCGCUgGGGgaCUGCUaAGCAGGGAc -3'
miRNA:   3'- cuaGCGAgUCUgaGACGG-UCGUCUCU- -5'
28749 3' -54.8 NC_006146.1 + 119119 0.66 0.932011
Target:  5'- aGUgGCU-GGACUCgGCUcugGGCAGAGAg -3'
miRNA:   3'- cUAgCGAgUCUGAGaCGG---UCGUCUCU- -5'
28749 3' -54.8 NC_006146.1 + 157054 0.66 0.925099
Target:  5'- uGGUCGC-CAGugUUUccaggacgcuguccGCCAGCAccGAGAa -3'
miRNA:   3'- -CUAGCGaGUCugAGA--------------CGGUCGU--CUCU- -5'
28749 3' -54.8 NC_006146.1 + 48117 0.68 0.87576
Target:  5'- -uUCGCg-AGACUCUGUCGcCGGGGAg -3'
miRNA:   3'- cuAGCGagUCUGAGACGGUcGUCUCU- -5'
28749 3' -54.8 NC_006146.1 + 112627 0.69 0.828086
Target:  5'- uGAUUGC-CAucGugUCUGUCAGCAGAa- -3'
miRNA:   3'- -CUAGCGaGU--CugAGACGGUCGUCUcu -5'
28749 3' -54.8 NC_006146.1 + 155076 0.7 0.773851
Target:  5'- aAUCGCUCGG-CUCgaugccggGCCAGauCAGGGAg -3'
miRNA:   3'- cUAGCGAGUCuGAGa-------CGGUC--GUCUCU- -5'
28749 3' -54.8 NC_006146.1 + 132782 0.7 0.761414
Target:  5'- cGGUCGCUgCAGGCUCgcaGCUgcucagcagcugcaGGCGGGGGa -3'
miRNA:   3'- -CUAGCGA-GUCUGAGa--CGG--------------UCGUCUCU- -5'
28749 3' -54.8 NC_006146.1 + 126184 0.71 0.724997
Target:  5'- --cCGCaUCAGGC-CgGCCAGCGGGGGc -3'
miRNA:   3'- cuaGCG-AGUCUGaGaCGGUCGUCUCU- -5'
28749 3' -54.8 NC_006146.1 + 117596 0.72 0.632663
Target:  5'- ---gGCUCGGACUCcgGCCAG-GGAGAg -3'
miRNA:   3'- cuagCGAGUCUGAGa-CGGUCgUCUCU- -5'
28749 3' -54.8 NC_006146.1 + 70611 0.75 0.50042
Target:  5'- uGAUCGCggugCAGGC-CUGCCAGCccccgcuaGGAGGc -3'
miRNA:   3'- -CUAGCGa---GUCUGaGACGGUCG--------UCUCU- -5'
28749 3' -54.8 NC_006146.1 + 13012 0.79 0.290212
Target:  5'- gGAUCGCcCGGGuCUCUGCUGGCAGAGu -3'
miRNA:   3'- -CUAGCGaGUCU-GAGACGGUCGUCUCu -5'
28749 3' -54.8 NC_006146.1 + 16090 0.79 0.290212
Target:  5'- gGAUCGCcCGGGuCUCUGCUGGCAGAGu -3'
miRNA:   3'- -CUAGCGaGUCU-GAGACGGUCGUCUCu -5'
28749 3' -54.8 NC_006146.1 + 19168 0.79 0.290212
Target:  5'- gGAUCGCcCGGGuCUCUGCUGGCAGAGu -3'
miRNA:   3'- -CUAGCGaGUCU-GAGACGGUCGUCUCu -5'
28749 3' -54.8 NC_006146.1 + 25324 0.79 0.290212
Target:  5'- gGAUCGCcCGGGuCUCUGCUGGCAGAGu -3'
miRNA:   3'- -CUAGCGaGUCU-GAGACGGUCGUCUCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.