Results 1 - 20 of 314 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28749 | 5' | -64.9 | NC_006146.1 | + | 117527 | 0.75 | 0.17969 |
Target: 5'- gUCUCacgCCuCUCCCUcgGGGCCUGGGCCGc -3' miRNA: 3'- -GGGGa--GGuGAGGGG--CCCGGAUCCGGC- -5' |
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28749 | 5' | -64.9 | NC_006146.1 | + | 12342 | 0.77 | 0.122822 |
Target: 5'- uCCCCU-CGC-CCCUGGGCCUcAGGCCc -3' miRNA: 3'- -GGGGAgGUGaGGGGCCCGGA-UCCGGc -5' |
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28749 | 5' | -64.9 | NC_006146.1 | + | 15421 | 0.77 | 0.122822 |
Target: 5'- uCCCCU-CGC-CCCUGGGCCUcAGGCCc -3' miRNA: 3'- -GGGGAgGUGaGGGGCCCGGA-UCCGGc -5' |
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28749 | 5' | -64.9 | NC_006146.1 | + | 13930 | 0.75 | 0.167491 |
Target: 5'- cCCCCUCCucucuccCUCCCCGaGGCCccGGCUc -3' miRNA: 3'- -GGGGAGGu------GAGGGGC-CCGGauCCGGc -5' |
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28749 | 5' | -64.9 | NC_006146.1 | + | 17007 | 0.75 | 0.167491 |
Target: 5'- cCCCCUCCucucuccCUCCCCGaGGCCccGGCUc -3' miRNA: 3'- -GGGGAGGu------GAGGGGC-CCGGauCCGGc -5' |
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28749 | 5' | -64.9 | NC_006146.1 | + | 18499 | 0.77 | 0.122822 |
Target: 5'- uCCCCU-CGC-CCCUGGGCCUcAGGCCc -3' miRNA: 3'- -GGGGAgGUGaGGGGCCCGGA-UCCGGc -5' |
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28749 | 5' | -64.9 | NC_006146.1 | + | 110437 | 0.77 | 0.128892 |
Target: 5'- gCCUCUcaCCGCUCCCCGcGGCCUGccgcucacucGGCCa -3' miRNA: 3'- -GGGGA--GGUGAGGGGC-CCGGAU----------CCGGc -5' |
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28749 | 5' | -64.9 | NC_006146.1 | + | 54630 | 0.75 | 0.167491 |
Target: 5'- gCCUCUCUgguccggugGCUCCCCGGGCauuggagGGGCCc -3' miRNA: 3'- -GGGGAGG---------UGAGGGGCCCGga-----UCCGGc -5' |
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28749 | 5' | -64.9 | NC_006146.1 | + | 29319 | 0.75 | 0.167491 |
Target: 5'- cCCCCUCCucucuccCUCCCCGaGGCCccGGCUc -3' miRNA: 3'- -GGGGAGGu------GAGGGGC-CCGGauCCGGc -5' |
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28749 | 5' | -64.9 | NC_006146.1 | + | 53003 | 0.74 | 0.197179 |
Target: 5'- gCCCCUCUucuggCCCUGGGCCUcacgcggcuGGCCGc -3' miRNA: 3'- -GGGGAGGuga--GGGGCCCGGAu--------CCGGC- -5' |
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28749 | 5' | -64.9 | NC_006146.1 | + | 41322 | 0.66 | 0.590311 |
Target: 5'- gUCCCUCCcuguuucGCgCCCCaaccuaucuggcccaGGGCCUGgcggugguGGCCGu -3' miRNA: 3'- -GGGGAGG-------UGaGGGG---------------CCCGGAU--------CCGGC- -5' |
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28749 | 5' | -64.9 | NC_006146.1 | + | 24655 | 0.77 | 0.122822 |
Target: 5'- uCCCCU-CGC-CCCUGGGCCUcAGGCCc -3' miRNA: 3'- -GGGGAgGUGaGGGGCCCGGA-UCCGGc -5' |
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28749 | 5' | -64.9 | NC_006146.1 | + | 21577 | 0.77 | 0.122822 |
Target: 5'- uCCCCU-CGC-CCCUGGGCCUcAGGCCc -3' miRNA: 3'- -GGGGAgGUGaGGGGCCCGGA-UCCGGc -5' |
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28749 | 5' | -64.9 | NC_006146.1 | + | 23163 | 0.75 | 0.167491 |
Target: 5'- cCCCCUCCucucuccCUCCCCGaGGCCccGGCUc -3' miRNA: 3'- -GGGGAGGu------GAGGGGC-CCGGauCCGGc -5' |
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28749 | 5' | -64.9 | NC_006146.1 | + | 26241 | 0.75 | 0.167491 |
Target: 5'- cCCCCUCCucucuccCUCCCCGaGGCCccGGCUc -3' miRNA: 3'- -GGGGAGGu------GAGGGGC-CCGGauCCGGc -5' |
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28749 | 5' | -64.9 | NC_006146.1 | + | 27733 | 0.77 | 0.122822 |
Target: 5'- uCCCCU-CGC-CCCUGGGCCUcAGGCCc -3' miRNA: 3'- -GGGGAgGUGaGGGGCCCGGA-UCCGGc -5' |
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28749 | 5' | -64.9 | NC_006146.1 | + | 129841 | 0.74 | 0.183929 |
Target: 5'- cUCCCUCCA--CCCCGaGGCCcccaGGGCCGc -3' miRNA: 3'- -GGGGAGGUgaGGGGC-CCGGa---UCCGGC- -5' |
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28749 | 5' | -64.9 | NC_006146.1 | + | 55881 | 0.74 | 0.199007 |
Target: 5'- cCCCCUCCccuGCUCCCCGcuccaccagcuccacGGCCauGGCCu -3' miRNA: 3'- -GGGGAGG---UGAGGGGC---------------CCGGauCCGGc -5' |
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28749 | 5' | -64.9 | NC_006146.1 | + | 137702 | 0.76 | 0.152381 |
Target: 5'- cCCCCUCCGgcCUCCCCccggGGuGCCcGGGCCu -3' miRNA: 3'- -GGGGAGGU--GAGGGG----CC-CGGaUCCGGc -5' |
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28749 | 5' | -64.9 | NC_006146.1 | + | 20085 | 0.75 | 0.167491 |
Target: 5'- cCCCCUCCucucuccCUCCCCGaGGCCccGGCUc -3' miRNA: 3'- -GGGGAGGu------GAGGGGC-CCGGauCCGGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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