miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2875 3' -55.4 NC_001493.1 + 128600 0.66 0.895111
Target:  5'- --gGGGUCAacagCUGGUgGAGcGAGUGCGu -3'
miRNA:   3'- cgaCCCAGUg---GAUCAaCUC-CUCGCGU- -5'
2875 3' -55.4 NC_001493.1 + 13046 0.66 0.895111
Target:  5'- --gGGGUCAacagCUGGUgGAGcGAGUGCGu -3'
miRNA:   3'- cgaCCCAGUg---GAUCAaCUC-CUCGCGU- -5'
2875 3' -55.4 NC_001493.1 + 50962 0.66 0.881234
Target:  5'- -gUGGGUCGC--GGUUGguGGGGGUGCc -3'
miRNA:   3'- cgACCCAGUGgaUCAAC--UCCUCGCGu -5'
2875 3' -55.4 NC_001493.1 + 119363 0.66 0.873949
Target:  5'- cGUUGaGUCGCCc----GAGGAGCGCGc -3'
miRNA:   3'- -CGACcCAGUGGaucaaCUCCUCGCGU- -5'
2875 3' -55.4 NC_001493.1 + 3809 0.66 0.873949
Target:  5'- cGUUGaGUCGCCc----GAGGAGCGCGc -3'
miRNA:   3'- -CGACcCAGUGGaucaaCUCCUCGCGU- -5'
2875 3' -55.4 NC_001493.1 + 124783 0.67 0.842624
Target:  5'- --cGGGUCGCgCUcaucGGGGAGCGCu -3'
miRNA:   3'- cgaCCCAGUG-GAucaaCUCCUCGCGu -5'
2875 3' -55.4 NC_001493.1 + 9229 0.67 0.842624
Target:  5'- --cGGGUCGCgCUcaucGGGGAGCGCu -3'
miRNA:   3'- cgaCCCAGUG-GAucaaCUCCUCGCGu -5'
2875 3' -55.4 NC_001493.1 + 102220 0.7 0.70144
Target:  5'- --aGGGUCGCgUGGcUGAuGAGCGCGc -3'
miRNA:   3'- cgaCCCAGUGgAUCaACUcCUCGCGU- -5'
2875 3' -55.4 NC_001493.1 + 121572 0.77 0.307636
Target:  5'- aGCUGGGUCACCUAGUUGAGa------ -3'
miRNA:   3'- -CGACCCAGUGGAUCAACUCcucgcgu -5'
2875 3' -55.4 NC_001493.1 + 6018 0.77 0.307636
Target:  5'- aGCUGGGUCACCUAGUUGAGa------ -3'
miRNA:   3'- -CGACCCAGUGGAUCAACUCcucgcgu -5'
2875 3' -55.4 NC_001493.1 + 121373 0.94 0.027503
Target:  5'- aGCU-GGUCACCUAGUUGAGGAGCGUAc -3'
miRNA:   3'- -CGAcCCAGUGGAUCAACUCCUCGCGU- -5'
2875 3' -55.4 NC_001493.1 + 5819 0.94 0.027503
Target:  5'- aGCU-GGUCACCUAGUUGAGGAGCGUAc -3'
miRNA:   3'- -CGAcCCAGUGGAUCAACUCCUCGCGU- -5'
2875 3' -55.4 NC_001493.1 + 121487 1.1 0.002113
Target:  5'- aGCUGGGUCACCUAGUUGAGGAGCGCAc -3'
miRNA:   3'- -CGACCCAGUGGAUCAACUCCUCGCGU- -5'
2875 3' -55.4 NC_001493.1 + 5933 1.1 0.002113
Target:  5'- aGCUGGGUCACCUAGUUGAGGAGCGCAc -3'
miRNA:   3'- -CGACCCAGUGGAUCAACUCCUCGCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.