miRNA display CGI


Results 1 - 20 of 24 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2875 5' -50.3 NC_001493.1 + 52285 0.66 0.994963
Target:  5'- gGGUUCUCUCUuuUCGGGuaucuCUAGGGA-UUCa -3'
miRNA:   3'- -CCAGGAGAGA--AGCUU-----GAUCCUUgGAG- -5'
2875 5' -50.3 NC_001493.1 + 46475 0.66 0.994139
Target:  5'- gGGUCCU-UCUUCGGACcaucgucGGGAACg-- -3'
miRNA:   3'- -CCAGGAgAGAAGCUUGa------UCCUUGgag -5'
2875 5' -50.3 NC_001493.1 + 73792 0.66 0.991
Target:  5'- -uUCCUCuUCUucUCGAAgaAGGAcuuCCUCg -3'
miRNA:   3'- ccAGGAG-AGA--AGCUUgaUCCUu--GGAG- -5'
2875 5' -50.3 NC_001493.1 + 69074 0.67 0.989424
Target:  5'- cGGUCCUCUUgUCGAACcccgugacggacAGGGcCCUg -3'
miRNA:   3'- -CCAGGAGAGaAGCUUGa-----------UCCUuGGAg -5'
2875 5' -50.3 NC_001493.1 + 84390 0.67 0.988259
Target:  5'- -cUCCUCUCUaCcauCUGGGGagACCUCa -3'
miRNA:   3'- ccAGGAGAGAaGcuuGAUCCU--UGGAG- -5'
2875 5' -50.3 NC_001493.1 + 42716 0.67 0.986666
Target:  5'- gGGUCCUCUCguggUC-AGgaGGGAACUg- -3'
miRNA:   3'- -CCAGGAGAGa---AGcUUgaUCCUUGGag -5'
2875 5' -50.3 NC_001493.1 + 2954 0.67 0.986666
Target:  5'- -cUCCUCUCcagUGAACUcGGAAaugcCCUCg -3'
miRNA:   3'- ccAGGAGAGaa-GCUUGAuCCUU----GGAG- -5'
2875 5' -50.3 NC_001493.1 + 118508 0.67 0.986666
Target:  5'- -cUCCUCUCcagUGAACUcGGAAaugcCCUCg -3'
miRNA:   3'- ccAGGAGAGaa-GCUUGAuCCUU----GGAG- -5'
2875 5' -50.3 NC_001493.1 + 51185 0.67 0.986666
Target:  5'- gGGcUCCgUCUCUUCGuACcGGGAgaggGCCUUc -3'
miRNA:   3'- -CC-AGG-AGAGAAGCuUGaUCCU----UGGAG- -5'
2875 5' -50.3 NC_001493.1 + 105022 0.67 0.982987
Target:  5'- uGUCaacUUCUUCGGGaagGGGGACCUCc -3'
miRNA:   3'- cCAGga-GAGAAGCUUga-UCCUUGGAG- -5'
2875 5' -50.3 NC_001493.1 + 130435 0.68 0.973402
Target:  5'- gGGUgCUCUCgUCGAGaCgcgAGGGGCCcCg -3'
miRNA:   3'- -CCAgGAGAGaAGCUU-Ga--UCCUUGGaG- -5'
2875 5' -50.3 NC_001493.1 + 90835 0.68 0.973402
Target:  5'- cGG-CCUCUCgacUCgGAGCcGGcGGGCCUCg -3'
miRNA:   3'- -CCaGGAGAGa--AG-CUUGaUC-CUUGGAG- -5'
2875 5' -50.3 NC_001493.1 + 14881 0.68 0.973402
Target:  5'- gGGUgCUCUCgUCGAGaCgcgAGGGGCCcCg -3'
miRNA:   3'- -CCAgGAGAGaAGCUU-Ga--UCCUUGGaG- -5'
2875 5' -50.3 NC_001493.1 + 24400 0.7 0.94816
Target:  5'- uGGUCUUUUCUUCGgGACUcAGGGucGCCa- -3'
miRNA:   3'- -CCAGGAGAGAAGC-UUGA-UCCU--UGGag -5'
2875 5' -50.3 NC_001493.1 + 8261 0.7 0.928278
Target:  5'- gGGUCCUCUCUcUCGGGggaGGGAACgUa -3'
miRNA:   3'- -CCAGGAGAGA-AGCUUga-UCCUUGgAg -5'
2875 5' -50.3 NC_001493.1 + 123815 0.7 0.928278
Target:  5'- gGGUCCUCUCUcUCGGGggaGGGAACgUa -3'
miRNA:   3'- -CCAGGAGAGA-AGCUUga-UCCUUGgAg -5'
2875 5' -50.3 NC_001493.1 + 3927 0.71 0.916778
Target:  5'- ---aCUCUU-UCGggUUGGGAACCUCc -3'
miRNA:   3'- ccagGAGAGaAGCuuGAUCCUUGGAG- -5'
2875 5' -50.3 NC_001493.1 + 119481 0.71 0.916778
Target:  5'- ---aCUCUU-UCGggUUGGGAACCUCc -3'
miRNA:   3'- ccagGAGAGaAGCuuGAUCCUUGGAG- -5'
2875 5' -50.3 NC_001493.1 + 6014 0.72 0.860642
Target:  5'- gGGUCaC-CUaguugaGAACUAGGAACCUCg -3'
miRNA:   3'- -CCAG-GaGAgaag--CUUGAUCCUUGGAG- -5'
2875 5' -50.3 NC_001493.1 + 121568 0.72 0.860642
Target:  5'- gGGUCaC-CUaguugaGAACUAGGAACCUCg -3'
miRNA:   3'- -CCAG-GaGAgaag--CUUGAUCCUUGGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.