Results 81 - 85 of 85 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
28750 | 3' | -56.9 | NC_006146.1 | + | 19763 | 0.66 | 0.881732 |
Target: 5'- uGGGCACCUGCgaagacauagagGGGGUugAGGUcUACg -3' miRNA: 3'- uCCCGUGGAUGag----------CUCCG--UCCGaAUG- -5' |
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28750 | 3' | -56.9 | NC_006146.1 | + | 141612 | 0.66 | 0.884525 |
Target: 5'- cGGGCGCCcuugcCUgGAGGCAGaGaCUggGCg -3' miRNA: 3'- uCCCGUGGau---GAgCUCCGUC-C-GAa-UG- -5' |
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28750 | 3' | -56.9 | NC_006146.1 | + | 144690 | 0.66 | 0.884525 |
Target: 5'- cGGGCGCCcuugcCUgGAGGCgagacuGGGCggcUGCg -3' miRNA: 3'- uCCCGUGGau---GAgCUCCG------UCCGa--AUG- -5' |
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28750 | 3' | -56.9 | NC_006146.1 | + | 147767 | 0.66 | 0.884525 |
Target: 5'- cGGGCGCCcuugcCUgGAGGCAGaGaCUggGCg -3' miRNA: 3'- uCCCGUGGau---GAgCUCCGUC-C-GAa-UG- -5' |
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28750 | 3' | -56.9 | NC_006146.1 | + | 51738 | 0.66 | 0.884525 |
Target: 5'- aGGcGGCGCCc---CGAGGUGGGCUucuugUGCg -3' miRNA: 3'- -UC-CCGUGGaugaGCUCCGUCCGA-----AUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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