Results 1 - 20 of 134 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28750 | 5' | -59.9 | NC_006146.1 | + | 159521 | 0.66 | 0.77669 |
Target: 5'- gGGgccaauGGCCucgaguuuuuucauuGGCCCGAGGGcuUCGCUc -3' miRNA: 3'- aCCau----UCGGu--------------CCGGGCUCCC--AGUGGa -5' |
|||||||
28750 | 5' | -59.9 | NC_006146.1 | + | 91997 | 0.66 | 0.775783 |
Target: 5'- cUGGcGGGCCcGGCCUGGGGcugCugCUg -3' miRNA: 3'- -ACCaUUCGGuCCGGGCUCCca-GugGA- -5' |
|||||||
28750 | 5' | -59.9 | NC_006146.1 | + | 25294 | 0.66 | 0.775783 |
Target: 5'- aGaGUcGGCCuAGGCCCGgggaguggagGGGGaUCGCCc -3' miRNA: 3'- aC-CAuUCGG-UCCGGGC----------UCCC-AGUGGa -5' |
|||||||
28750 | 5' | -59.9 | NC_006146.1 | + | 28372 | 0.66 | 0.775783 |
Target: 5'- aGaGUcGGCCuAGGCCCGgggaguggagGGGGaUCGCCc -3' miRNA: 3'- aC-CAuUCGG-UCCGGGC----------UCCC-AGUGGa -5' |
|||||||
28750 | 5' | -59.9 | NC_006146.1 | + | 22216 | 0.66 | 0.775783 |
Target: 5'- aGaGUcGGCCuAGGCCCGgggaguggagGGGGaUCGCCc -3' miRNA: 3'- aC-CAuUCGG-UCCGGGC----------UCCC-AGUGGa -5' |
|||||||
28750 | 5' | -59.9 | NC_006146.1 | + | 16060 | 0.66 | 0.775783 |
Target: 5'- aGaGUcGGCCuAGGCCCGgggaguggagGGGGaUCGCCc -3' miRNA: 3'- aC-CAuUCGG-UCCGGGC----------UCCC-AGUGGa -5' |
|||||||
28750 | 5' | -59.9 | NC_006146.1 | + | 19138 | 0.66 | 0.775783 |
Target: 5'- aGaGUcGGCCuAGGCCCGgggaguggagGGGGaUCGCCc -3' miRNA: 3'- aC-CAuUCGG-UCCGGGC----------UCCC-AGUGGa -5' |
|||||||
28750 | 5' | -59.9 | NC_006146.1 | + | 12982 | 0.66 | 0.775783 |
Target: 5'- aGaGUcGGCCuAGGCCCGgggaguggagGGGGaUCGCCc -3' miRNA: 3'- aC-CAuUCGG-UCCGGGC----------UCCC-AGUGGa -5' |
|||||||
28750 | 5' | -59.9 | NC_006146.1 | + | 170194 | 0.66 | 0.773053 |
Target: 5'- aGGgcgGGGCCgGGGCCUGgcgggggccagcgcGGGGUC-CCg -3' miRNA: 3'- aCCa--UUCGG-UCCGGGC--------------UCCCAGuGGa -5' |
|||||||
28750 | 5' | -59.9 | NC_006146.1 | + | 169263 | 0.66 | 0.773053 |
Target: 5'- aGGgcgGGGCCgGGGCCUGgcgggggccagcgcGGGGUC-CCg -3' miRNA: 3'- aCCa--UUCGG-UCCGGGC--------------UCCCAGuGGa -5' |
|||||||
28750 | 5' | -59.9 | NC_006146.1 | + | 168331 | 0.66 | 0.773053 |
Target: 5'- aGGgcgGGGCCgGGGCCUGgcgggggccagcgcGGGGUC-CCg -3' miRNA: 3'- aCCa--UUCGG-UCCGGGC--------------UCCCAGuGGa -5' |
|||||||
28750 | 5' | -59.9 | NC_006146.1 | + | 167399 | 0.66 | 0.773053 |
Target: 5'- aGGgcgGGGCCgGGGCCUGgcgggggccagcgcGGGGUC-CCg -3' miRNA: 3'- aCCa--UUCGG-UCCGGGC--------------UCCCAGuGGa -5' |
|||||||
28750 | 5' | -59.9 | NC_006146.1 | + | 61524 | 0.66 | 0.76664 |
Target: 5'- aGGgaGGCCuccGGuGUCCGGGGGaCGCCc -3' miRNA: 3'- aCCauUCGG---UC-CGGGCUCCCaGUGGa -5' |
|||||||
28750 | 5' | -59.9 | NC_006146.1 | + | 56506 | 0.66 | 0.76664 |
Target: 5'- ----cAGUCGGGCCgCGGGGucGUCGCCg -3' miRNA: 3'- accauUCGGUCCGG-GCUCC--CAGUGGa -5' |
|||||||
28750 | 5' | -59.9 | NC_006146.1 | + | 170603 | 0.66 | 0.76664 |
Target: 5'- gUGGcGAgcgcGCCGGGCCCGcccccGGGUCuucCCg -3' miRNA: 3'- -ACCaUU----CGGUCCGGGCu----CCCAGu--GGa -5' |
|||||||
28750 | 5' | -59.9 | NC_006146.1 | + | 69577 | 0.66 | 0.76664 |
Target: 5'- cUGGUGggggaagauGGCCAGGUCCuGGGG-CAgCg -3' miRNA: 3'- -ACCAU---------UCGGUCCGGGcUCCCaGUgGa -5' |
|||||||
28750 | 5' | -59.9 | NC_006146.1 | + | 52992 | 0.66 | 0.76664 |
Target: 5'- cGGaccugccGGCCGuGGCCgCGGGGGUCgaugACCa -3' miRNA: 3'- aCCau-----UCGGU-CCGG-GCUCCCAG----UGGa -5' |
|||||||
28750 | 5' | -59.9 | NC_006146.1 | + | 30246 | 0.66 | 0.76572 |
Target: 5'- cGGaaauuGGCCgcaaaaaGGGCUguaGAGGGUCACCc -3' miRNA: 3'- aCCau---UCGG-------UCCGGg--CUCCCAGUGGa -5' |
|||||||
28750 | 5' | -59.9 | NC_006146.1 | + | 55816 | 0.66 | 0.757384 |
Target: 5'- aUGaGUAcAGCCAGcGCCUGGGuGGgCACCc -3' miRNA: 3'- -AC-CAU-UCGGUC-CGGGCUC-CCaGUGGa -5' |
|||||||
28750 | 5' | -59.9 | NC_006146.1 | + | 51571 | 0.66 | 0.757384 |
Target: 5'- cUGGgc-GCCgccgggagGGGCCCGGGGGa-GCCa -3' miRNA: 3'- -ACCauuCGG--------UCCGGGCUCCCagUGGa -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home