Results 21 - 40 of 122 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28751 | 3' | -57.5 | NC_006146.1 | + | 27614 | 0.66 | 0.865958 |
Target: 5'- cUCC-GGGUCCAcuGGGUgGCCAg----- -3' miRNA: 3'- -AGGaCCCAGGU--CCCGgCGGUaauacg -5' |
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28751 | 3' | -57.5 | NC_006146.1 | + | 91763 | 0.66 | 0.850775 |
Target: 5'- uUCUUGGGUgggugCCuGGGgUGCCGUgcugGCa -3' miRNA: 3'- -AGGACCCA-----GGuCCCgGCGGUAaua-CG- -5' |
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28751 | 3' | -57.5 | NC_006146.1 | + | 30382 | 0.66 | 0.842891 |
Target: 5'- cCCaGGG-CUagguuugcuguAGGGCCGCCAggugGCg -3' miRNA: 3'- aGGaCCCaGG-----------UCCCGGCGGUaauaCG- -5' |
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28751 | 3' | -57.5 | NC_006146.1 | + | 154682 | 0.67 | 0.83482 |
Target: 5'- gCCUGGGagUCCGGGGUguugaGCCugc-UGCc -3' miRNA: 3'- aGGACCC--AGGUCCCGg----CGGuaauACG- -5' |
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28751 | 3' | -57.5 | NC_006146.1 | + | 35603 | 0.67 | 0.83482 |
Target: 5'- cCCUGGGUCUguGGGcaGCUGCC-UUA-GCc -3' miRNA: 3'- aGGACCCAGG--UCC--CGGCGGuAAUaCG- -5' |
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28751 | 3' | -57.5 | NC_006146.1 | + | 157638 | 0.67 | 0.826571 |
Target: 5'- gCCUGGGUCUuGGGCaccaGCCccUGgaccagGCu -3' miRNA: 3'- aGGACCCAGGuCCCGg---CGGuaAUa-----CG- -5' |
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28751 | 3' | -57.5 | NC_006146.1 | + | 152632 | 0.67 | 0.82657 |
Target: 5'- gUgUGGGUCCuuguGGGucuCCGCCgguugggcuGUUGUGCc -3' miRNA: 3'- aGgACCCAGGu---CCC---GGCGG---------UAAUACG- -5' |
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28751 | 3' | -57.5 | NC_006146.1 | + | 42623 | 0.67 | 0.82657 |
Target: 5'- gCCUGGGgCUcGGccGCCGCCGUgg-GCc -3' miRNA: 3'- aGGACCCaGGuCC--CGGCGGUAauaCG- -5' |
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28751 | 3' | -57.5 | NC_006146.1 | + | 105193 | 0.67 | 0.82657 |
Target: 5'- aCCgGGG-CCGGGGa-GCCGgggGUGCc -3' miRNA: 3'- aGGaCCCaGGUCCCggCGGUaa-UACG- -5' |
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28751 | 3' | -57.5 | NC_006146.1 | + | 143398 | 0.67 | 0.82657 |
Target: 5'- gUgUGGGUCCuuguGGGucuCCGCCgguugggcuGUUGUGCc -3' miRNA: 3'- aGgACCCAGGu---CCC---GGCGG---------UAAUACG- -5' |
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28751 | 3' | -57.5 | NC_006146.1 | + | 146476 | 0.67 | 0.82657 |
Target: 5'- gUgUGGGUCCuuguGGGucuCCGCCgguugggcuGUUGUGCc -3' miRNA: 3'- aGgACCCAGGu---CCC---GGCGG---------UAAUACG- -5' |
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28751 | 3' | -57.5 | NC_006146.1 | + | 149554 | 0.67 | 0.82657 |
Target: 5'- gUgUGGGUCCuuguGGGucuCCGCCgguugggcuGUUGUGCc -3' miRNA: 3'- aGgACCCAGGu---CCC---GGCGG---------UAAUACG- -5' |
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28751 | 3' | -57.5 | NC_006146.1 | + | 155709 | 0.67 | 0.82657 |
Target: 5'- gUgUGGGUCCuuguGGGucuCCGCCgguugggcuGUUGUGCc -3' miRNA: 3'- aGgACCCAGGu---CCC---GGCGG---------UAAUACG- -5' |
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28751 | 3' | -57.5 | NC_006146.1 | + | 8516 | 0.67 | 0.818149 |
Target: 5'- aCCgGGGUCCcgggcgcGGGCgCGCCAagggGCu -3' miRNA: 3'- aGGaCCCAGGu------CCCG-GCGGUaauaCG- -5' |
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28751 | 3' | -57.5 | NC_006146.1 | + | 95061 | 0.67 | 0.818149 |
Target: 5'- gUUUGuGGUCCAGaGCUGCCccugGUGCa -3' miRNA: 3'- aGGAC-CCAGGUCcCGGCGGuaa-UACG- -5' |
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28751 | 3' | -57.5 | NC_006146.1 | + | 8284 | 0.67 | 0.818149 |
Target: 5'- cUCUGGGagccccacucCCGGGGUCGCUcucUGUGCu -3' miRNA: 3'- aGGACCCa---------GGUCCCGGCGGua-AUACG- -5' |
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28751 | 3' | -57.5 | NC_006146.1 | + | 116659 | 0.67 | 0.809563 |
Target: 5'- gCCUGa--CCGGGGCCGCCcagagGCu -3' miRNA: 3'- aGGACccaGGUCCCGGCGGuaauaCG- -5' |
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28751 | 3' | -57.5 | NC_006146.1 | + | 120104 | 0.67 | 0.809563 |
Target: 5'- cCCUGGGaCCGuacGGaCGCCcgUGUGCc -3' miRNA: 3'- aGGACCCaGGUc--CCgGCGGuaAUACG- -5' |
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28751 | 3' | -57.5 | NC_006146.1 | + | 47762 | 0.67 | 0.809563 |
Target: 5'- cCCUGGcGaguacggccUCCAGGGCCGUCugaaaGCc -3' miRNA: 3'- aGGACC-C---------AGGUCCCGGCGGuaauaCG- -5' |
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28751 | 3' | -57.5 | NC_006146.1 | + | 56648 | 0.67 | 0.809563 |
Target: 5'- gUCCagGGGUCCGucgaucGCCGCCGUc-UGCa -3' miRNA: 3'- -AGGa-CCCAGGUcc----CGGCGGUAauACG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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