Results 1 - 20 of 103 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28751 | 5' | -53.6 | NC_006146.1 | + | 135 | 0.73 | 0.689684 |
Target: 5'- aGGACu--AUGGCGCCUGGAUgGCUg- -3' miRNA: 3'- -UCUGuuuUACCGCGGGUCUAgCGGag -5' |
|||||||
28751 | 5' | -53.6 | NC_006146.1 | + | 4790 | 0.74 | 0.637732 |
Target: 5'- cAGuACGAGuuucuGCGCCCGGggCGCCUCa -3' miRNA: 3'- -UC-UGUUUuac--CGCGGGUCuaGCGGAG- -5' |
|||||||
28751 | 5' | -53.6 | NC_006146.1 | + | 6013 | 0.66 | 0.970962 |
Target: 5'- gAGGCAAcgaGG-GCCCAGAUCcUCUCc -3' miRNA: 3'- -UCUGUUuuaCCgCGGGUCUAGcGGAG- -5' |
|||||||
28751 | 5' | -53.6 | NC_006146.1 | + | 7826 | 0.71 | 0.769705 |
Target: 5'- gAGACuccAUGGCGCCCGGuagacaccuGUCGgaCCUCu -3' miRNA: 3'- -UCUGuuuUACCGCGGGUC---------UAGC--GGAG- -5' |
|||||||
28751 | 5' | -53.6 | NC_006146.1 | + | 11443 | 0.71 | 0.806968 |
Target: 5'- uGGcCAAGGUGGCgGCCCucaaGGAguucccCGCCUCg -3' miRNA: 3'- -UCuGUUUUACCG-CGGG----UCUa-----GCGGAG- -5' |
|||||||
28751 | 5' | -53.6 | NC_006146.1 | + | 12287 | 0.67 | 0.940416 |
Target: 5'- gGGugGGAucaGGCuaaCCCAaGUCGCCUCa -3' miRNA: 3'- -UCugUUUua-CCGc--GGGUcUAGCGGAG- -5' |
|||||||
28751 | 5' | -53.6 | NC_006146.1 | + | 13272 | 0.67 | 0.949464 |
Target: 5'- gGGACc----GGCGCCCcagagccccucGGGUCcGCCUCc -3' miRNA: 3'- -UCUGuuuuaCCGCGGG-----------UCUAG-CGGAG- -5' |
|||||||
28751 | 5' | -53.6 | NC_006146.1 | + | 15366 | 0.67 | 0.940416 |
Target: 5'- gGGugGGAucaGGCuaaCCCAaGUCGCCUCa -3' miRNA: 3'- -UCugUUUua-CCGc--GGGUcUAGCGGAG- -5' |
|||||||
28751 | 5' | -53.6 | NC_006146.1 | + | 16350 | 0.67 | 0.949464 |
Target: 5'- gGGACc----GGCGCCCcagagccccucGGGUCcGCCUCc -3' miRNA: 3'- -UCUGuuuuaCCGCGGG-----------UCUAG-CGGAG- -5' |
|||||||
28751 | 5' | -53.6 | NC_006146.1 | + | 18444 | 0.67 | 0.940416 |
Target: 5'- gGGugGGAucaGGCuaaCCCAaGUCGCCUCa -3' miRNA: 3'- -UCugUUUua-CCGc--GGGUcUAGCGGAG- -5' |
|||||||
28751 | 5' | -53.6 | NC_006146.1 | + | 19428 | 0.67 | 0.949464 |
Target: 5'- gGGACc----GGCGCCCcagagccccucGGGUCcGCCUCc -3' miRNA: 3'- -UCUGuuuuaCCGCGGG-----------UCUAG-CGGAG- -5' |
|||||||
28751 | 5' | -53.6 | NC_006146.1 | + | 20279 | 0.68 | 0.90031 |
Target: 5'- cGugGAGGUGGCcgagaucGCCaAGAUCGCC-Ca -3' miRNA: 3'- uCugUUUUACCG-------CGGgUCUAGCGGaG- -5' |
|||||||
28751 | 5' | -53.6 | NC_006146.1 | + | 21522 | 0.67 | 0.940416 |
Target: 5'- gGGugGGAucaGGCuaaCCCAaGUCGCCUCa -3' miRNA: 3'- -UCugUUUua-CCGc--GGGUcUAGCGGAG- -5' |
|||||||
28751 | 5' | -53.6 | NC_006146.1 | + | 22506 | 0.67 | 0.949464 |
Target: 5'- gGGACc----GGCGCCCcagagccccucGGGUCcGCCUCc -3' miRNA: 3'- -UCUGuuuuaCCGCGGG-----------UCUAG-CGGAG- -5' |
|||||||
28751 | 5' | -53.6 | NC_006146.1 | + | 23040 | 0.68 | 0.924994 |
Target: 5'- cGGAagAAAGUGGCGCCU-GAucugcaacgUCGCCUUc -3' miRNA: 3'- -UCUg-UUUUACCGCGGGuCU---------AGCGGAG- -5' |
|||||||
28751 | 5' | -53.6 | NC_006146.1 | + | 23725 | 0.67 | 0.940415 |
Target: 5'- cGGGCGAAggGGCG-CCGGucugCGCCg- -3' miRNA: 3'- -UCUGUUUuaCCGCgGGUCua--GCGGag -5' |
|||||||
28751 | 5' | -53.6 | NC_006146.1 | + | 24600 | 0.67 | 0.940416 |
Target: 5'- gGGugGGAucaGGCuaaCCCAaGUCGCCUCa -3' miRNA: 3'- -UCugUUUua-CCGc--GGGUcUAGCGGAG- -5' |
|||||||
28751 | 5' | -53.6 | NC_006146.1 | + | 25584 | 0.67 | 0.949464 |
Target: 5'- gGGACc----GGCGCCCcagagccccucGGGUCcGCCUCc -3' miRNA: 3'- -UCUGuuuuaCCGCGGG-----------UCUAG-CGGAG- -5' |
|||||||
28751 | 5' | -53.6 | NC_006146.1 | + | 27678 | 0.67 | 0.940416 |
Target: 5'- gGGugGGAucaGGCuaaCCCAaGUCGCCUCa -3' miRNA: 3'- -UCugUUUua-CCGc--GGGUcUAGCGGAG- -5' |
|||||||
28751 | 5' | -53.6 | NC_006146.1 | + | 28662 | 0.67 | 0.949464 |
Target: 5'- gGGACc----GGCGCCCcagagccccucGGGUCcGCCUCc -3' miRNA: 3'- -UCUGuuuuaCCGCGGG-----------UCUAG-CGGAG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home