miRNA display CGI


Results 41 - 60 of 103 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28751 5' -53.6 NC_006146.1 + 105700 0.67 0.949463
Target:  5'- cGGGCucccagGGCcCCCAGAgCGCCUa -3'
miRNA:   3'- -UCUGuuuua-CCGcGGGUCUaGCGGAg -5'
28751 5' -53.6 NC_006146.1 + 18444 0.67 0.940416
Target:  5'- gGGugGGAucaGGCuaaCCCAaGUCGCCUCa -3'
miRNA:   3'- -UCugUUUua-CCGc--GGGUcUAGCGGAG- -5'
28751 5' -53.6 NC_006146.1 + 143693 0.67 0.949034
Target:  5'- gGGACAGAGuuagaaguuagccUGGgGCCuCGGAggGCCUg -3'
miRNA:   3'- -UCUGUUUU-------------ACCgCGG-GUCUagCGGAg -5'
28751 5' -53.6 NC_006146.1 + 21522 0.67 0.940416
Target:  5'- gGGugGGAucaGGCuaaCCCAaGUCGCCUCa -3'
miRNA:   3'- -UCugUUUua-CCGc--GGGUcUAGCGGAG- -5'
28751 5' -53.6 NC_006146.1 + 89683 0.67 0.945062
Target:  5'- cGACGGAA-GGgGCCCGGGgaacgGCCUg -3'
miRNA:   3'- uCUGUUUUaCCgCGGGUCUag---CGGAg -5'
28751 5' -53.6 NC_006146.1 + 19428 0.67 0.949464
Target:  5'- gGGACc----GGCGCCCcagagccccucGGGUCcGCCUCc -3'
miRNA:   3'- -UCUGuuuuaCCGCGGG-----------UCUAG-CGGAG- -5'
28751 5' -53.6 NC_006146.1 + 28662 0.67 0.949464
Target:  5'- gGGACc----GGCGCCCcagagccccucGGGUCcGCCUCc -3'
miRNA:   3'- -UCUGuuuuaCCGCGGG-----------UCUAG-CGGAG- -5'
28751 5' -53.6 NC_006146.1 + 147179 0.67 0.949464
Target:  5'- -cGCAGAccGGCGCCCcu-UCGCC-Cg -3'
miRNA:   3'- ucUGUUUuaCCGCGGGucuAGCGGaG- -5'
28751 5' -53.6 NC_006146.1 + 22506 0.67 0.949464
Target:  5'- gGGACc----GGCGCCCcagagccccucGGGUCcGCCUCc -3'
miRNA:   3'- -UCUGuuuuaCCGCGGG-----------UCUAG-CGGAG- -5'
28751 5' -53.6 NC_006146.1 + 65211 0.67 0.929855
Target:  5'- gGGGCccuGGGAgcccgGGCGUCCAGAggugaccUCGCUUCc -3'
miRNA:   3'- -UCUG---UUUUa----CCGCGGGUCU-------AGCGGAG- -5'
28751 5' -53.6 NC_006146.1 + 23725 0.67 0.940415
Target:  5'- cGGGCGAAggGGCG-CCGGucugCGCCg- -3'
miRNA:   3'- -UCUGUUUuaCCGCgGGUCua--GCGGag -5'
28751 5' -53.6 NC_006146.1 + 42709 0.67 0.935523
Target:  5'- cGGCGccgcGGCGCCCcccuGGGcCGCCUCc -3'
miRNA:   3'- uCUGUuuuaCCGCGGG----UCUaGCGGAG- -5'
28751 5' -53.6 NC_006146.1 + 25584 0.67 0.949464
Target:  5'- gGGACc----GGCGCCCcagagccccucGGGUCcGCCUCc -3'
miRNA:   3'- -UCUGuuuuaCCGCGGG-----------UCUAG-CGGAG- -5'
28751 5' -53.6 NC_006146.1 + 48640 0.68 0.913471
Target:  5'- cGGGCuccGGGcgGGUGCCCAG--CGCCUUc -3'
miRNA:   3'- -UCUG---UUUuaCCGCGGGUCuaGCGGAG- -5'
28751 5' -53.6 NC_006146.1 + 23040 0.68 0.924994
Target:  5'- cGGAagAAAGUGGCGCCU-GAucugcaacgUCGCCUUc -3'
miRNA:   3'- -UCUg-UUUUACCGCGGGuCU---------AGCGGAG- -5'
28751 5' -53.6 NC_006146.1 + 43941 0.68 0.919356
Target:  5'- cGGGCGGGGUcuauccagacGCGCCCGGAgagCGCCa- -3'
miRNA:   3'- -UCUGUUUUAc---------CGCGGGUCUa--GCGGag -5'
28751 5' -53.6 NC_006146.1 + 20279 0.68 0.90031
Target:  5'- cGugGAGGUGGCcgagaucGCCaAGAUCGCC-Ca -3'
miRNA:   3'- uCugUUUUACCG-------CGGgUCUAGCGGaG- -5'
28751 5' -53.6 NC_006146.1 + 110924 0.68 0.924994
Target:  5'- aGGACAGcAUGGUcucguGCCCcugcuuUCGCCUCc -3'
miRNA:   3'- -UCUGUUuUACCG-----CGGGucu---AGCGGAG- -5'
28751 5' -53.6 NC_006146.1 + 88259 0.68 0.913471
Target:  5'- cAGGCAAAAUccGGCGUgugCUGGGUCggGCCUCu -3'
miRNA:   3'- -UCUGUUUUA--CCGCG---GGUCUAG--CGGAG- -5'
28751 5' -53.6 NC_006146.1 + 67788 0.68 0.900961
Target:  5'- gGGACGuGAcGGCGgCCAGGcucugcccCGCCUCg -3'
miRNA:   3'- -UCUGUuUUaCCGCgGGUCUa-------GCGGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.