miRNA display CGI


Results 61 - 80 of 103 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28751 5' -53.6 NC_006146.1 + 161762 0.66 0.966022
Target:  5'- gAGGucCGAGggGGCGCCUGGGcgggggccugaaucuUCGCCUg -3'
miRNA:   3'- -UCU--GUUUuaCCGCGGGUCU---------------AGCGGAg -5'
28751 5' -53.6 NC_006146.1 + 40365 0.66 0.9647
Target:  5'- cGGCGGAGaaGGCcCCCuGGUCGCCg- -3'
miRNA:   3'- uCUGUUUUa-CCGcGGGuCUAGCGGag -5'
28751 5' -53.6 NC_006146.1 + 134279 0.66 0.964364
Target:  5'- uGGCAGAAUuuaaaagugGGgGCCCGGGUCauugguuucuaaaGCUUCa -3'
miRNA:   3'- uCUGUUUUA---------CCgCGGGUCUAG-------------CGGAG- -5'
28751 5' -53.6 NC_006146.1 + 155953 0.66 0.957548
Target:  5'- cGGugGAGGUGGC-CCCGGG-CGCa-- -3'
miRNA:   3'- -UCugUUUUACCGcGGGUCUaGCGgag -5'
28751 5' -53.6 NC_006146.1 + 152875 0.66 0.957548
Target:  5'- cGGugGAGGUGGC-CCCGGG-CGCa-- -3'
miRNA:   3'- -UCugUUUUACCGcGGGUCUaGCGgag -5'
28751 5' -53.6 NC_006146.1 + 149797 0.66 0.957548
Target:  5'- cGGugGAGGUGGC-CCCGGG-CGCa-- -3'
miRNA:   3'- -UCugUUUUACCGcGGGUCUaGCGgag -5'
28751 5' -53.6 NC_006146.1 + 146719 0.66 0.957548
Target:  5'- cGGugGAGGUGGC-CCCGGG-CGCa-- -3'
miRNA:   3'- -UCugUUUUACCGcGGGUCUaGCGgag -5'
28751 5' -53.6 NC_006146.1 + 143642 0.66 0.957548
Target:  5'- cGGugGAGGUGGC-CCCGGG-CGCa-- -3'
miRNA:   3'- -UCugUUUUACCGcGGGUCUaGCGgag -5'
28751 5' -53.6 NC_006146.1 + 120760 0.66 0.956396
Target:  5'- cGACGAGcgcuggcGGCGCCUcaugucccuggcggAGGUCGCCg- -3'
miRNA:   3'- uCUGUUUua-----CCGCGGG--------------UCUAGCGGag -5'
28751 5' -53.6 NC_006146.1 + 156004 0.66 0.952401
Target:  5'- gGGACAGAGuuagaaguuaggccUGGgGCCuCGGAggGCCUg -3'
miRNA:   3'- -UCUGUUUU--------------ACCgCGG-GUCUagCGGAg -5'
28751 5' -53.6 NC_006146.1 + 152926 0.66 0.952401
Target:  5'- gGGACAGAGuuagaaguuaggccUGGgGCCuCGGAggGCCUg -3'
miRNA:   3'- -UCUGUUUU--------------ACCgCGG-GUCUagCGGAg -5'
28751 5' -53.6 NC_006146.1 + 149848 0.66 0.952401
Target:  5'- gGGACAGAGuuagaaguuaggccUGGgGCCuCGGAggGCCUg -3'
miRNA:   3'- -UCUGUUUU--------------ACCgCGG-GUCUagCGGAg -5'
28751 5' -53.6 NC_006146.1 + 146770 0.66 0.952401
Target:  5'- gGGACAGAGuuagaaguuaggccUGGgGCCuCGGAggGCCUg -3'
miRNA:   3'- -UCUGUUUU--------------ACCgCGG-GUCUagCGGAg -5'
28751 5' -53.6 NC_006146.1 + 105700 0.67 0.949463
Target:  5'- cGGGCucccagGGCcCCCAGAgCGCCUa -3'
miRNA:   3'- -UCUGuuuua-CCGcGGGUCUaGCGGAg -5'
28751 5' -53.6 NC_006146.1 + 143693 0.67 0.949034
Target:  5'- gGGACAGAGuuagaaguuagccUGGgGCCuCGGAggGCCUg -3'
miRNA:   3'- -UCUGUUUU-------------ACCgCGG-GUCUagCGGAg -5'
28751 5' -53.6 NC_006146.1 + 23725 0.67 0.940415
Target:  5'- cGGGCGAAggGGCG-CCGGucugCGCCg- -3'
miRNA:   3'- -UCUGUUUuaCCGCgGGUCua--GCGGag -5'
28751 5' -53.6 NC_006146.1 + 42709 0.67 0.935523
Target:  5'- cGGCGccgcGGCGCCCcccuGGGcCGCCUCc -3'
miRNA:   3'- uCUGUuuuaCCGCGGG----UCUaGCGGAG- -5'
28751 5' -53.6 NC_006146.1 + 23040 0.68 0.924994
Target:  5'- cGGAagAAAGUGGCGCCU-GAucugcaacgUCGCCUUc -3'
miRNA:   3'- -UCUg-UUUUACCGCGGGuCU---------AGCGGAG- -5'
28751 5' -53.6 NC_006146.1 + 43941 0.68 0.919356
Target:  5'- cGGGCGGGGUcuauccagacGCGCCCGGAgagCGCCa- -3'
miRNA:   3'- -UCUGUUUUAc---------CGCGGGUCUa--GCGGag -5'
28751 5' -53.6 NC_006146.1 + 158136 0.69 0.894342
Target:  5'- gGGACcuGGUGGCGCCCGc--CGgCUCc -3'
miRNA:   3'- -UCUGuuUUACCGCGGGUcuaGCgGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.