Results 1 - 20 of 28 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28752 | 3' | -54.8 | NC_006146.1 | + | 157876 | 1.08 | 0.003965 |
Target: 5'- gGAUCGCUCAGACUCUGCCAGCAGAGAc -3' miRNA: 3'- -CUAGCGAGUCUGAGACGGUCGUCUCU- -5' |
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28752 | 3' | -54.8 | NC_006146.1 | + | 157054 | 0.66 | 0.925099 |
Target: 5'- uGGUCGC-CAGugUUUccaggacgcuguccGCCAGCAccGAGAa -3' miRNA: 3'- -CUAGCGaGUCugAGA--------------CGGUCGU--CUCU- -5' |
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28752 | 3' | -54.8 | NC_006146.1 | + | 155076 | 0.7 | 0.773851 |
Target: 5'- aAUCGCUCGG-CUCgaugccggGCCAGauCAGGGAg -3' miRNA: 3'- cUAGCGAGUCuGAGa-------CGGUC--GUCUCU- -5' |
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28752 | 3' | -54.8 | NC_006146.1 | + | 154798 | 1.08 | 0.003965 |
Target: 5'- gGAUCGCUCAGACUCUGCCAGCAGAGAc -3' miRNA: 3'- -CUAGCGAGUCUGAGACGGUCGUCUCU- -5' |
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28752 | 3' | -54.8 | NC_006146.1 | + | 151720 | 1.08 | 0.003965 |
Target: 5'- gGAUCGCUCAGACUCUGCCAGCAGAGAc -3' miRNA: 3'- -CUAGCGAGUCUGAGACGGUCGUCUCU- -5' |
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28752 | 3' | -54.8 | NC_006146.1 | + | 148643 | 1.08 | 0.003965 |
Target: 5'- gGAUCGCUCAGACUCUGCCAGCAGAGAc -3' miRNA: 3'- -CUAGCGAGUCUGAGACGGUCGUCUCU- -5' |
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28752 | 3' | -54.8 | NC_006146.1 | + | 145565 | 1.08 | 0.003965 |
Target: 5'- gGAUCGCUCAGACUCUGCCAGCAGAGAc -3' miRNA: 3'- -CUAGCGAGUCUGAGACGGUCGUCUCU- -5' |
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28752 | 3' | -54.8 | NC_006146.1 | + | 142487 | 1.08 | 0.003965 |
Target: 5'- gGAUCGCUCAGACUCUGCCAGCAGAGAc -3' miRNA: 3'- -CUAGCGAGUCUGAGACGGUCGUCUCU- -5' |
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28752 | 3' | -54.8 | NC_006146.1 | + | 132782 | 0.7 | 0.761414 |
Target: 5'- cGGUCGCUgCAGGCUCgcaGCUgcucagcagcugcaGGCGGGGGa -3' miRNA: 3'- -CUAGCGA-GUCUGAGa--CGG--------------UCGUCUCU- -5' |
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28752 | 3' | -54.8 | NC_006146.1 | + | 128206 | 0.66 | 0.932011 |
Target: 5'- cGggCGCUgggGGGCUCUGCCAGCcucAGGc -3' miRNA: 3'- -CuaGCGAg--UCUGAGACGGUCGuc-UCU- -5' |
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28752 | 3' | -54.8 | NC_006146.1 | + | 126184 | 0.71 | 0.724997 |
Target: 5'- --cCGCaUCAGGC-CgGCCAGCGGGGGc -3' miRNA: 3'- cuaGCG-AGUCUGaGaCGGUCGUCUCU- -5' |
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28752 | 3' | -54.8 | NC_006146.1 | + | 125217 | 0.66 | 0.946382 |
Target: 5'- cGggCGCUCAGAgcccUUCcGCUcccuGGCGGAGAc -3' miRNA: 3'- -CuaGCGAGUCU----GAGaCGG----UCGUCUCU- -5' |
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28752 | 3' | -54.8 | NC_006146.1 | + | 123596 | 0.66 | 0.937045 |
Target: 5'- ---aGCUCAaagaaGCUCUuggccaGCCAGCGGAGGu -3' miRNA: 3'- cuagCGAGUc----UGAGA------CGGUCGUCUCU- -5' |
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28752 | 3' | -54.8 | NC_006146.1 | + | 119119 | 0.66 | 0.932011 |
Target: 5'- aGUgGCU-GGACUCgGCUcugGGCAGAGAg -3' miRNA: 3'- cUAgCGAgUCUGAGaCGG---UCGUCUCU- -5' |
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28752 | 3' | -54.8 | NC_006146.1 | + | 117596 | 0.72 | 0.632663 |
Target: 5'- ---gGCUCGGACUCcgGCCAG-GGAGAg -3' miRNA: 3'- cuagCGAGUCUGAGa-CGGUCgUCUCU- -5' |
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28752 | 3' | -54.8 | NC_006146.1 | + | 112627 | 0.69 | 0.828086 |
Target: 5'- uGAUUGC-CAucGugUCUGUCAGCAGAa- -3' miRNA: 3'- -CUAGCGaGU--CugAGACGGUCGUCUcu -5' |
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28752 | 3' | -54.8 | NC_006146.1 | + | 110875 | 0.66 | 0.937045 |
Target: 5'- --gCGuCUCGGGCUCggGCgcaGGCGGGGAc -3' miRNA: 3'- cuaGC-GAGUCUGAGa-CGg--UCGUCUCU- -5' |
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28752 | 3' | -54.8 | NC_006146.1 | + | 70611 | 0.75 | 0.50042 |
Target: 5'- uGAUCGCggugCAGGC-CUGCCAGCccccgcuaGGAGGc -3' miRNA: 3'- -CUAGCGa---GUCUGaGACGGUCG--------UCUCU- -5' |
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28752 | 3' | -54.8 | NC_006146.1 | + | 62131 | 0.66 | 0.937045 |
Target: 5'- uAUgGCccUCAGAauUUCUGCCAGCcucAGGGAa -3' miRNA: 3'- cUAgCG--AGUCU--GAGACGGUCG---UCUCU- -5' |
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28752 | 3' | -54.8 | NC_006146.1 | + | 48117 | 0.68 | 0.87576 |
Target: 5'- -uUCGCg-AGACUCUGUCGcCGGGGAg -3' miRNA: 3'- cuAGCGagUCUGAGACGGUcGUCUCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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