Results 61 - 80 of 314 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
28752 | 5' | -64.9 | NC_006146.1 | + | 163784 | 0.67 | 0.522441 |
Target: 5'- aUCCUCUaguuaguauGCagCCUGGGCCUuggcGGGCCa -3' miRNA: 3'- gGGGAGG---------UGagGGGCCCGGA----UCCGGc -5' |
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28752 | 5' | -64.9 | NC_006146.1 | + | 69219 | 0.67 | 0.535257 |
Target: 5'- cCCCCUCUagcGCcgcccguagcccguuUCCCCccaGGGCC-AGGuCCGg -3' miRNA: 3'- -GGGGAGG---UG---------------AGGGG---CCCGGaUCC-GGC- -5' |
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28752 | 5' | -64.9 | NC_006146.1 | + | 137385 | 0.67 | 0.510648 |
Target: 5'- gCCgggUCCGCUgCCCgguccuggagcucgGGGCCggGGGCCGg -3' miRNA: 3'- gGGg--AGGUGAgGGG--------------CCCGGa-UCCGGC- -5' |
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28752 | 5' | -64.9 | NC_006146.1 | + | 137292 | 0.67 | 0.510648 |
Target: 5'- gCCgggUCCGCUgCCCgguccuggagcucgGGGCCggGGGCCGg -3' miRNA: 3'- gGGg--AGGUGAgGGG--------------CCCGGa-UCCGGC- -5' |
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28752 | 5' | -64.9 | NC_006146.1 | + | 136748 | 0.67 | 0.504344 |
Target: 5'- aCCCC-CCACccUCgCCGGGgCUccgggAGGCCc -3' miRNA: 3'- -GGGGaGGUG--AGgGGCCCgGA-----UCCGGc -5' |
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28752 | 5' | -64.9 | NC_006146.1 | + | 129554 | 0.67 | 0.504344 |
Target: 5'- aCCaCCgCCAggCCCUGGGCCagaUAGGuuGg -3' miRNA: 3'- -GG-GGaGGUgaGGGGCCCGG---AUCCggC- -5' |
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28752 | 5' | -64.9 | NC_006146.1 | + | 33026 | 0.67 | 0.495397 |
Target: 5'- cCCCCUgCCGg-CCCgGGGCg-GGGCCc -3' miRNA: 3'- -GGGGA-GGUgaGGGgCCCGgaUCCGGc -5' |
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28752 | 5' | -64.9 | NC_006146.1 | + | 168131 | 0.67 | 0.486523 |
Target: 5'- gUCUUCC-CUgacaUCCGGGCUUGGGCCu -3' miRNA: 3'- gGGGAGGuGAg---GGGCCCGGAUCCGGc -5' |
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28752 | 5' | -64.9 | NC_006146.1 | + | 103671 | 0.67 | 0.486523 |
Target: 5'- -gCCUCCgugGCUUCCUGuGCCU-GGCCGg -3' miRNA: 3'- ggGGAGG---UGAGGGGCcCGGAuCCGGC- -5' |
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28752 | 5' | -64.9 | NC_006146.1 | + | 33193 | 0.67 | 0.486523 |
Target: 5'- gCCCgggCAC-CCCCGGGgggAGGCCGg -3' miRNA: 3'- gGGGag-GUGaGGGGCCCggaUCCGGC- -5' |
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28752 | 5' | -64.9 | NC_006146.1 | + | 137478 | 0.67 | 0.510648 |
Target: 5'- gCCgggUCCGCUgCCCgguccuggagcucgGGGCCggGGGCCGg -3' miRNA: 3'- gGGg--AGGUGAgGGG--------------CCCGGa-UCCGGC- -5' |
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28752 | 5' | -64.9 | NC_006146.1 | + | 18843 | 0.67 | 0.51336 |
Target: 5'- -gCUUCCAgaCCCCGGGCgCU--GCCGg -3' miRNA: 3'- ggGGAGGUgaGGGGCCCG-GAucCGGC- -5' |
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28752 | 5' | -64.9 | NC_006146.1 | + | 135248 | 0.67 | 0.510648 |
Target: 5'- gCCgggUCCGCUgCCCgguccuggagcucgGGGCCggGGGCCGg -3' miRNA: 3'- gGGg--AGGUGAgGGG--------------CCCGGa-UCCGGC- -5' |
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28752 | 5' | -64.9 | NC_006146.1 | + | 135155 | 0.67 | 0.510648 |
Target: 5'- gCCgggUCCGCUgCCCgguccuggagcucgGGGCCggGGGCCGg -3' miRNA: 3'- gGGg--AGGUGAgGGG--------------CCCGGa-UCCGGC- -5' |
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28752 | 5' | -64.9 | NC_006146.1 | + | 47190 | 0.67 | 0.504344 |
Target: 5'- gCCCgCCGCcgCCCCGaGcGCC-AGGCCc -3' miRNA: 3'- gGGGaGGUGa-GGGGC-C-CGGaUCCGGc -5' |
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28752 | 5' | -64.9 | NC_006146.1 | + | 62977 | 0.67 | 0.504344 |
Target: 5'- cCCCCUUUuucauCUUCCUGGcCCUGGGCUc -3' miRNA: 3'- -GGGGAGGu----GAGGGGCCcGGAUCCGGc -5' |
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28752 | 5' | -64.9 | NC_006146.1 | + | 135341 | 0.67 | 0.510648 |
Target: 5'- gCCgggUCCGCUgCCCgguccuggagcucgGGGCCggGGGCCGg -3' miRNA: 3'- gGGg--AGGUGAgGGG--------------CCCGGa-UCCGGC- -5' |
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28752 | 5' | -64.9 | NC_006146.1 | + | 26509 | 0.67 | 0.51336 |
Target: 5'- cCCCCUuuGC-CCCCuGGC--AGGCCa -3' miRNA: 3'- -GGGGAggUGaGGGGcCCGgaUCCGGc -5' |
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28752 | 5' | -64.9 | NC_006146.1 | + | 23431 | 0.67 | 0.51336 |
Target: 5'- cCCCCUuuGC-CCCCuGGC--AGGCCa -3' miRNA: 3'- -GGGGAggUGaGGGGcCCGgaUCCGGc -5' |
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28752 | 5' | -64.9 | NC_006146.1 | + | 20353 | 0.67 | 0.51336 |
Target: 5'- cCCCCUuuGC-CCCCuGGC--AGGCCa -3' miRNA: 3'- -GGGGAggUGaGGGGcCCGgaUCCGGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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