miRNA display CGI


Results 121 - 140 of 314 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28752 5' -64.9 NC_006146.1 + 102020 0.68 0.43498
Target:  5'- cCUUCUCCAuCUCCaucaGGGCC-AGGCUGu -3'
miRNA:   3'- -GGGGAGGU-GAGGgg--CCCGGaUCCGGC- -5'
28752 5' -64.9 NC_006146.1 + 43163 0.68 0.443354
Target:  5'- uCUUCUCCagGCUCUCCGGGCCca-GCCc -3'
miRNA:   3'- -GGGGAGG--UGAGGGGCCCGGaucCGGc -5'
28752 5' -64.9 NC_006146.1 + 116182 0.68 0.443354
Target:  5'- uCCCCUCgGCcgcccugaCCCGGGCCc--GCCGu -3'
miRNA:   3'- -GGGGAGgUGag------GGGCCCGGaucCGGC- -5'
28752 5' -64.9 NC_006146.1 + 54786 0.68 0.449269
Target:  5'- cCCCUUCCACUuguuuuacggggacCCUCGGGU---GGCCGc -3'
miRNA:   3'- -GGGGAGGUGA--------------GGGGCCCGgauCCGGC- -5'
28752 5' -64.9 NC_006146.1 + 117100 0.68 0.450967
Target:  5'- gCCCC-CCGCUauggacgCCgCgCGGGCCgAGGCCc -3'
miRNA:   3'- -GGGGaGGUGA-------GG-G-GCCCGGaUCCGGc -5'
28752 5' -64.9 NC_006146.1 + 215 0.68 0.451818
Target:  5'- cCCCCgcgaCGgUCCCCGGGgCgccccuGGCCu -3'
miRNA:   3'- -GGGGag--GUgAGGGGCCCgGau----CCGGc -5'
28752 5' -64.9 NC_006146.1 + 4205 0.68 0.451818
Target:  5'- cCCCCUCCcauugccccguCUCCCCccuGCC-AGGCCa -3'
miRNA:   3'- -GGGGAGGu----------GAGGGGcc-CGGaUCCGGc -5'
28752 5' -64.9 NC_006146.1 + 42041 0.68 0.451818
Target:  5'- cCCCCUCUucguggccCUUCCUGuGCCU-GGCCGg -3'
miRNA:   3'- -GGGGAGGu-------GAGGGGCcCGGAuCCGGC- -5'
28752 5' -64.9 NC_006146.1 + 147437 0.68 0.46037
Target:  5'- aCCUggCCACggCCaGGGCCUcguAGGCCGa -3'
miRNA:   3'- gGGGa-GGUGagGGgCCCGGA---UCCGGC- -5'
28752 5' -64.9 NC_006146.1 + 56666 0.68 0.426698
Target:  5'- gCCCUCC-CUgaggUgCCGGGCCcccugGGGCUGg -3'
miRNA:   3'- gGGGAGGuGA----GgGGCCCGGa----UCCGGC- -5'
28752 5' -64.9 NC_006146.1 + 71904 0.68 0.426698
Target:  5'- aCCCUCCugcgcgcggcCUCugaCCUGGGCCUgaccuGGGCCu -3'
miRNA:   3'- gGGGAGGu---------GAG---GGGCCCGGA-----UCCGGc -5'
28752 5' -64.9 NC_006146.1 + 29473 0.68 0.43498
Target:  5'- uCCCCaCCcCUCCCCGGccacCCcAGGCCc -3'
miRNA:   3'- -GGGGaGGuGAGGGGCCc---GGaUCCGGc -5'
28752 5' -64.9 NC_006146.1 + 131062 0.68 0.451818
Target:  5'- cCCCCgccggcCCACUgugcggccgaggCCgCCGGGCCgucaacGGCCGc -3'
miRNA:   3'- -GGGGa-----GGUGA------------GG-GGCCCGGau----CCGGC- -5'
28752 5' -64.9 NC_006146.1 + 93604 0.68 0.446729
Target:  5'- aCCCgCCggGCUCCUgGGGCUgcuguccuccccggAGGCCGa -3'
miRNA:   3'- gGGGaGG--UGAGGGgCCCGGa-------------UCCGGC- -5'
28752 5' -64.9 NC_006146.1 + 127321 0.68 0.469006
Target:  5'- cUCCCgccCCGCUCCCCGGGaacgCUcAGuacGCCGu -3'
miRNA:   3'- -GGGGa--GGUGAGGGGCCCg---GA-UC---CGGC- -5'
28752 5' -64.9 NC_006146.1 + 20239 0.68 0.43498
Target:  5'- uCCCCaCCcCUCCCCGGccacCCcAGGCCc -3'
miRNA:   3'- -GGGGaGGuGAGGGGCCc---GGaUCCGGc -5'
28752 5' -64.9 NC_006146.1 + 17161 0.68 0.43498
Target:  5'- uCCCCaCCcCUCCCCGGccacCCcAGGCCc -3'
miRNA:   3'- -GGGGaGGuGAGGGGCCc---GGaUCCGGc -5'
28752 5' -64.9 NC_006146.1 + 14083 0.68 0.43498
Target:  5'- uCCCCaCCcCUCCCCGGccacCCcAGGCCc -3'
miRNA:   3'- -GGGGaGGuGAGGGGCCc---GGaUCCGGc -5'
28752 5' -64.9 NC_006146.1 + 98895 0.68 0.469006
Target:  5'- cCCCCgCUACUCaCCCGcGCCaGGGUCu -3'
miRNA:   3'- -GGGGaGGUGAG-GGGCcCGGaUCCGGc -5'
28752 5' -64.9 NC_006146.1 + 157512 0.68 0.46037
Target:  5'- gCUCCUCCG-UCCUCuggacuagGGGcCCUGGGCCc -3'
miRNA:   3'- -GGGGAGGUgAGGGG--------CCC-GGAUCCGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.