miRNA display CGI


Results 61 - 80 of 314 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28752 5' -64.9 NC_006146.1 + 16889 0.72 0.276387
Target:  5'- cCCCCUCagcuuguCUCCCCaccGGGUCcaucAGGCCGg -3'
miRNA:   3'- -GGGGAGgu-----GAGGGG---CCCGGa---UCCGGC- -5'
28752 5' -64.9 NC_006146.1 + 46388 0.72 0.258727
Target:  5'- cCCCCgUCC-CUCgCCaGGGCCgagaccAGGCCGa -3'
miRNA:   3'- -GGGG-AGGuGAGgGG-CCCGGa-----UCCGGC- -5'
28752 5' -64.9 NC_006146.1 + 23044 0.72 0.276387
Target:  5'- cCCCCUCagcuuguCUCCCCaccGGGUCcaucAGGCCGg -3'
miRNA:   3'- -GGGGAGgu-----GAGGGG---CCCGGa---UCCGGC- -5'
28752 5' -64.9 NC_006146.1 + 114703 0.71 0.282483
Target:  5'- gCUCgUCCGCgagaCCCGGGCCcuggcGGCCGa -3'
miRNA:   3'- -GGGgAGGUGag--GGGCCCGGau---CCGGC- -5'
28752 5' -64.9 NC_006146.1 + 106668 0.71 0.294995
Target:  5'- gCCgUCCuCUCCCCGGGCaCgggaucccugGGGCUGu -3'
miRNA:   3'- gGGgAGGuGAGGGGCCCG-Ga---------UCCGGC- -5'
28752 5' -64.9 NC_006146.1 + 142758 0.71 0.301411
Target:  5'- gCCCgccggCUCCAa-CCUCGGGCCUcuGGGCUGg -3'
miRNA:   3'- -GGG-----GAGGUgaGGGGCCCGGA--UCCGGC- -5'
28752 5' -64.9 NC_006146.1 + 145836 0.71 0.301411
Target:  5'- gCCCgccggCUCCAa-CCUCGGGCCUcuGGGCUGg -3'
miRNA:   3'- -GGG-----GAGGUgaGGGGCCCGGA--UCCGGC- -5'
28752 5' -64.9 NC_006146.1 + 148914 0.71 0.301411
Target:  5'- gCCCgccggCUCCAa-CCUCGGGCCUcuGGGCUGg -3'
miRNA:   3'- -GGG-----GAGGUgaGGGGCCCGGA--UCCGGC- -5'
28752 5' -64.9 NC_006146.1 + 151992 0.71 0.301411
Target:  5'- gCCCgccggCUCCAa-CCUCGGGCCUcuGGGCUGg -3'
miRNA:   3'- -GGG-----GAGGUgaGGGGCCCGGA--UCCGGC- -5'
28752 5' -64.9 NC_006146.1 + 155070 0.71 0.301411
Target:  5'- gCCCgccggCUCCAa-CCUCGGGCCUcuGGGCUGg -3'
miRNA:   3'- -GGG-----GAGGUgaGGGGCCCGGA--UCCGGC- -5'
28752 5' -64.9 NC_006146.1 + 158149 0.71 0.301411
Target:  5'- gCCCgccggCUCCAa-CCUCGGGCCUcuGGGCUGg -3'
miRNA:   3'- -GGG-----GAGGUgaGGGGCCCGGA--UCCGGC- -5'
28752 5' -64.9 NC_006146.1 + 4034 0.71 0.307935
Target:  5'- gCCCUCCGCUCCCCccucccGCC-GGGCUu -3'
miRNA:   3'- gGGGAGGUGAGGGGcc----CGGaUCCGGc -5'
28752 5' -64.9 NC_006146.1 + 119317 0.71 0.282483
Target:  5'- gCCCCUCUgGCUcCCCCGGGCCccucccGGCgGc -3'
miRNA:   3'- -GGGGAGG-UGA-GGGGCCCGGau----CCGgC- -5'
28752 5' -64.9 NC_006146.1 + 17954 0.71 0.288686
Target:  5'- gCCCUCCAggCCuCCGaGGCCccAGGCCu -3'
miRNA:   3'- gGGGAGGUgaGG-GGC-CCGGa-UCCGGc -5'
28752 5' -64.9 NC_006146.1 + 51640 0.71 0.321303
Target:  5'- uCCaggCUCUggACUCCCaggGGGCCaGGGCCGg -3'
miRNA:   3'- -GGg--GAGG--UGAGGGg--CCCGGaUCCGGC- -5'
28752 5' -64.9 NC_006146.1 + 117715 0.71 0.314565
Target:  5'- gCCCC-CCAaggCCgGGGCCgAGGCCGa -3'
miRNA:   3'- -GGGGaGGUgagGGgCCCGGaUCCGGC- -5'
28752 5' -64.9 NC_006146.1 + 129040 0.71 0.314565
Target:  5'- aCCUCUUCACgaggCCCCGGuaGCCccuGGCCa -3'
miRNA:   3'- -GGGGAGGUGa---GGGGCC--CGGau-CCGGc -5'
28752 5' -64.9 NC_006146.1 + 136842 0.71 0.307935
Target:  5'- gCCCCgugCCACgggaCCCCcGGCCggcaUAGGCCc -3'
miRNA:   3'- -GGGGa--GGUGa---GGGGcCCGG----AUCCGGc -5'
28752 5' -64.9 NC_006146.1 + 115640 0.71 0.307935
Target:  5'- gCCCCacgagCCGCUUcgCCCGGGCCgcccGGGCg- -3'
miRNA:   3'- -GGGGa----GGUGAG--GGGCCCGGa---UCCGgc -5'
28752 5' -64.9 NC_006146.1 + 126786 0.71 0.282483
Target:  5'- cCCCCUCC--UCgCCGGGCagccgGGGCCu -3'
miRNA:   3'- -GGGGAGGugAGgGGCCCGga---UCCGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.