Results 101 - 120 of 314 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
28752 | 5' | -64.9 | NC_006146.1 | + | 22650 | 0.71 | 0.321303 |
Target: 5'- -aCCUCagggugcCUCCCCGGGuCCcAGGCCa -3' miRNA: 3'- ggGGAGgu-----GAGGGGCCC-GGaUCCGGc -5' |
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28752 | 5' | -64.9 | NC_006146.1 | + | 19572 | 0.71 | 0.321303 |
Target: 5'- -aCCUCagggugcCUCCCCGGGuCCcAGGCCa -3' miRNA: 3'- ggGGAGgu-----GAGGGGCCC-GGaUCCGGc -5' |
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28752 | 5' | -64.9 | NC_006146.1 | + | 16494 | 0.71 | 0.321303 |
Target: 5'- -aCCUCagggugcCUCCCCGGGuCCcAGGCCa -3' miRNA: 3'- ggGGAGgu-----GAGGGGCCC-GGaUCCGGc -5' |
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28752 | 5' | -64.9 | NC_006146.1 | + | 155070 | 0.71 | 0.301411 |
Target: 5'- gCCCgccggCUCCAa-CCUCGGGCCUcuGGGCUGg -3' miRNA: 3'- -GGG-----GAGGUgaGGGGCCCGGA--UCCGGC- -5' |
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28752 | 5' | -64.9 | NC_006146.1 | + | 151992 | 0.71 | 0.301411 |
Target: 5'- gCCCgccggCUCCAa-CCUCGGGCCUcuGGGCUGg -3' miRNA: 3'- -GGG-----GAGGUgaGGGGCCCGGA--UCCGGC- -5' |
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28752 | 5' | -64.9 | NC_006146.1 | + | 137152 | 0.71 | 0.305967 |
Target: 5'- gCCCCugggUCCGCUgCCCCGcuccggcgggggguGGCC-GGGCCGc -3' miRNA: 3'- -GGGG----AGGUGA-GGGGC--------------CCGGaUCCGGC- -5' |
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28752 | 5' | -64.9 | NC_006146.1 | + | 137245 | 0.71 | 0.305967 |
Target: 5'- gCCCCugggUCCGCUgCCCCGcuccggcgggggguGGCC-GGGCCGc -3' miRNA: 3'- -GGGG----AGGUGA-GGGGC--------------CCGGaUCCGGC- -5' |
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28752 | 5' | -64.9 | NC_006146.1 | + | 137338 | 0.71 | 0.305967 |
Target: 5'- gCCCCugggUCCGCUgCCCCGcuccggcgggggguGGCC-GGGCCGc -3' miRNA: 3'- -GGGG----AGGUGA-GGGGC--------------CCGGaUCCGGC- -5' |
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28752 | 5' | -64.9 | NC_006146.1 | + | 137431 | 0.71 | 0.305967 |
Target: 5'- gCCCCugggUCCGCUgCCCCGcuccggcgggggguGGCC-GGGCCGc -3' miRNA: 3'- -GGGG----AGGUGA-GGGGC--------------CCGGaUCCGGC- -5' |
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28752 | 5' | -64.9 | NC_006146.1 | + | 137524 | 0.71 | 0.305967 |
Target: 5'- gCCCCugggUCCGCUgCCCCGcuccggcgggggguGGCC-GGGCCGc -3' miRNA: 3'- -GGGG----AGGUGA-GGGGC--------------CCGGaUCCGGC- -5' |
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28752 | 5' | -64.9 | NC_006146.1 | + | 167239 | 0.71 | 0.307935 |
Target: 5'- cUCCCgcggCCAgUCCCUggaugucggggaGGGCCcgGGGCCGc -3' miRNA: 3'- -GGGGa---GGUgAGGGG------------CCCGGa-UCCGGC- -5' |
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28752 | 5' | -64.9 | NC_006146.1 | + | 168171 | 0.71 | 0.307935 |
Target: 5'- cUCCCgcggCCAgUCCCUggaugucggggaGGGCCcgGGGCCGc -3' miRNA: 3'- -GGGGa---GGUgAGGGG------------CCCGGa-UCCGGC- -5' |
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28752 | 5' | -64.9 | NC_006146.1 | + | 169103 | 0.71 | 0.307935 |
Target: 5'- cUCCCgcggCCAgUCCCUggaugucggggaGGGCCcgGGGCCGc -3' miRNA: 3'- -GGGGa---GGUgAGGGG------------CCCGGa-UCCGGC- -5' |
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28752 | 5' | -64.9 | NC_006146.1 | + | 170035 | 0.71 | 0.307935 |
Target: 5'- cUCCCgcggCCAgUCCCUggaugucggggaGGGCCcgGGGCCGc -3' miRNA: 3'- -GGGGa---GGUgAGGGG------------CCCGGa-UCCGGC- -5' |
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28752 | 5' | -64.9 | NC_006146.1 | + | 114703 | 0.71 | 0.282483 |
Target: 5'- gCUCgUCCGCgagaCCCGGGCCcuggcGGCCGa -3' miRNA: 3'- -GGGgAGGUGag--GGGCCCGGau---CCGGC- -5' |
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28752 | 5' | -64.9 | NC_006146.1 | + | 106668 | 0.71 | 0.294995 |
Target: 5'- gCCgUCCuCUCCCCGGGCaCgggaucccugGGGCUGu -3' miRNA: 3'- gGGgAGGuGAGGGGCCCG-Ga---------UCCGGC- -5' |
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28752 | 5' | -64.9 | NC_006146.1 | + | 142758 | 0.71 | 0.301411 |
Target: 5'- gCCCgccggCUCCAa-CCUCGGGCCUcuGGGCUGg -3' miRNA: 3'- -GGG-----GAGGUgaGGGGCCCGGA--UCCGGC- -5' |
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28752 | 5' | -64.9 | NC_006146.1 | + | 145836 | 0.71 | 0.301411 |
Target: 5'- gCCCgccggCUCCAa-CCUCGGGCCUcuGGGCUGg -3' miRNA: 3'- -GGG-----GAGGUgaGGGGCCCGGA--UCCGGC- -5' |
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28752 | 5' | -64.9 | NC_006146.1 | + | 148914 | 0.71 | 0.301411 |
Target: 5'- gCCCgccggCUCCAa-CCUCGGGCCUcuGGGCUGg -3' miRNA: 3'- -GGG-----GAGGUgaGGGGCCCGGA--UCCGGC- -5' |
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28752 | 5' | -64.9 | NC_006146.1 | + | 13416 | 0.71 | 0.321303 |
Target: 5'- -aCCUCagggugcCUCCCCGGGuCCcAGGCCa -3' miRNA: 3'- ggGGAGgu-----GAGGGGCCC-GGaUCCGGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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