Results 121 - 140 of 314 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
28752 | 5' | -64.9 | NC_006146.1 | + | 71854 | 0.7 | 0.34216 |
Target: 5'- aCCCCgaCAC-CCgCCGGGCCcugggGGGCCu -3' miRNA: 3'- -GGGGagGUGaGG-GGCCCGGa----UCCGGc -5' |
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28752 | 5' | -64.9 | NC_006146.1 | + | 14387 | 0.7 | 0.34216 |
Target: 5'- gCCUC-CCGCUCCCCuccGGGCCgcguacGCCGu -3' miRNA: 3'- -GGGGaGGUGAGGGG---CCCGGauc---CGGC- -5' |
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28752 | 5' | -64.9 | NC_006146.1 | + | 14031 | 0.7 | 0.335101 |
Target: 5'- gCCCCgUCCACccugUCCCCcgcaGGCC-AGGCCc -3' miRNA: 3'- -GGGG-AGGUG----AGGGGc---CCGGaUCCGGc -5' |
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28752 | 5' | -64.9 | NC_006146.1 | + | 117561 | 0.7 | 0.335101 |
Target: 5'- -aCCUCaCGCcgCCCCGcGGCCgccGGGCCu -3' miRNA: 3'- ggGGAG-GUGa-GGGGC-CCGGa--UCCGGc -5' |
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28752 | 5' | -64.9 | NC_006146.1 | + | 122701 | 0.7 | 0.335101 |
Target: 5'- gCCCUCCAgUCCCCGGauGCCaa-GUCGg -3' miRNA: 3'- gGGGAGGUgAGGGGCC--CGGaucCGGC- -5' |
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28752 | 5' | -64.9 | NC_006146.1 | + | 127705 | 0.7 | 0.328148 |
Target: 5'- gCCCCaUCCccgcCUCCCgcgaggagcugaUGGGgCUGGGCCGg -3' miRNA: 3'- -GGGG-AGGu---GAGGG------------GCCCgGAUCCGGC- -5' |
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28752 | 5' | -64.9 | NC_006146.1 | + | 73540 | 0.7 | 0.347885 |
Target: 5'- gCCaggCUCCggaGCUCCCCGGGCgggugguuguGGCCGg -3' miRNA: 3'- -GGg--GAGG---UGAGGGGCCCGgau-------CCGGC- -5' |
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28752 | 5' | -64.9 | NC_006146.1 | + | 4585 | 0.7 | 0.356599 |
Target: 5'- cCCCCaUCCGCUCUCUGaGCCUAGaCCc -3' miRNA: 3'- -GGGG-AGGUGAGGGGCcCGGAUCcGGc -5' |
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28752 | 5' | -64.9 | NC_006146.1 | + | 20946 | 0.7 | 0.356599 |
Target: 5'- gCCC-CCACUCCCac-GCCUGGGCg- -3' miRNA: 3'- gGGGaGGUGAGGGgccCGGAUCCGgc -5' |
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28752 | 5' | -64.9 | NC_006146.1 | + | 20187 | 0.7 | 0.335101 |
Target: 5'- gCCCCgUCCACccugUCCCCcgcaGGCC-AGGCCc -3' miRNA: 3'- -GGGG-AGGUG----AGGGGc---CCGGaUCCGGc -5' |
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28752 | 5' | -64.9 | NC_006146.1 | + | 23265 | 0.7 | 0.335101 |
Target: 5'- gCCCCgUCCACccugUCCCCcgcaGGCC-AGGCCc -3' miRNA: 3'- -GGGG-AGGUG----AGGGGc---CCGGaUCCGGc -5' |
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28752 | 5' | -64.9 | NC_006146.1 | + | 26343 | 0.7 | 0.335101 |
Target: 5'- gCCCCgUCCACccugUCCCCcgcaGGCC-AGGCCc -3' miRNA: 3'- -GGGG-AGGUG----AGGGGc---CCGGaUCCGGc -5' |
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28752 | 5' | -64.9 | NC_006146.1 | + | 29421 | 0.7 | 0.335101 |
Target: 5'- gCCCCgUCCACccugUCCCCcgcaGGCC-AGGCCc -3' miRNA: 3'- -GGGG-AGGUG----AGGGGc---CCGGaUCCGGc -5' |
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28752 | 5' | -64.9 | NC_006146.1 | + | 78836 | 0.7 | 0.34216 |
Target: 5'- gCCCC-CCGCagcagCCCCaGGCC-GGGCCc -3' miRNA: 3'- -GGGGaGGUGa----GGGGcCCGGaUCCGGc -5' |
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28752 | 5' | -64.9 | NC_006146.1 | + | 44580 | 0.7 | 0.349327 |
Target: 5'- uUCCUCCugGC-CCCCGGGCCgcuGCCu -3' miRNA: 3'- gGGGAGG--UGaGGGGCCCGGaucCGGc -5' |
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28752 | 5' | -64.9 | NC_006146.1 | + | 135725 | 0.7 | 0.356599 |
Target: 5'- gCCCgUCCuggagCUCgGGGCCggGGGCCGg -3' miRNA: 3'- -GGGgAGGuga--GGGgCCCGGa-UCCGGC- -5' |
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28752 | 5' | -64.9 | NC_006146.1 | + | 17109 | 0.7 | 0.335101 |
Target: 5'- gCCCCgUCCACccugUCCCCcgcaGGCC-AGGCCc -3' miRNA: 3'- -GGGG-AGGUG----AGGGGc---CCGGaUCCGGc -5' |
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28752 | 5' | -64.9 | NC_006146.1 | + | 126523 | 0.7 | 0.363978 |
Target: 5'- gCCCCacaCGCcCCCCGGGCggGGGUCu -3' miRNA: 3'- -GGGGag-GUGaGGGGCCCGgaUCCGGc -5' |
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28752 | 5' | -64.9 | NC_006146.1 | + | 124181 | 0.7 | 0.356599 |
Target: 5'- -gCCUCCGCccgCCUCGGaGCCgccgcGGCCGa -3' miRNA: 3'- ggGGAGGUGa--GGGGCC-CGGau---CCGGC- -5' |
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28752 | 5' | -64.9 | NC_006146.1 | + | 106180 | 0.7 | 0.363235 |
Target: 5'- uCCCCggccugcugaCACgggUCCCGGGCCUccugccaGGGCCu -3' miRNA: 3'- -GGGGag--------GUGa--GGGGCCCGGA-------UCCGGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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