miRNA display CGI


Results 141 - 160 of 314 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28752 5' -64.9 NC_006146.1 + 123243 0.69 0.379049
Target:  5'- aCCCUggCCGCcgCgCUGGGCC-GGGCCGc -3'
miRNA:   3'- -GGGGa-GGUGa-GgGGCCCGGaUCCGGC- -5'
28752 5' -64.9 NC_006146.1 + 3342 0.69 0.379049
Target:  5'- gCCUCUCCGCgggccUCCacaCGuGGCCUcccaggagagGGGCCGg -3'
miRNA:   3'- -GGGGAGGUG-----AGGg--GC-CCGGA----------UCCGGC- -5'
28752 5' -64.9 NC_006146.1 + 2410 0.69 0.379049
Target:  5'- gCCUCUCCGCgggccUCCacaCGuGGCCUcccaggagagGGGCCGg -3'
miRNA:   3'- -GGGGAGGUG-----AGGg--GC-CCGGA----------UCCGGC- -5'
28752 5' -64.9 NC_006146.1 + 1478 0.69 0.379049
Target:  5'- gCCUCUCCGCgggccUCCacaCGuGGCCUcccaggagagGGGCCGg -3'
miRNA:   3'- -GGGGAGGUG-----AGGg--GC-CCGGA----------UCCGGC- -5'
28752 5' -64.9 NC_006146.1 + 547 0.69 0.379049
Target:  5'- gCCUCUCCGCgggccUCCacaCGuGGCCUcccaggagagGGGCCGg -3'
miRNA:   3'- -GGGGAGGUG-----AGGg--GC-CCGGA----------UCCGGC- -5'
28752 5' -64.9 NC_006146.1 + 109948 0.69 0.402426
Target:  5'- aCCCC-CCAC-CCCCGGGCCUc----- -3'
miRNA:   3'- -GGGGaGGUGaGGGGCCCGGAuccggc -5'
28752 5' -64.9 NC_006146.1 + 22281 0.69 0.41042
Target:  5'- aUCCUCCGagaCUCCGGGCCccaaggcGGCCGc -3'
miRNA:   3'- gGGGAGGUga-GGGGCCCGGau-----CCGGC- -5'
28752 5' -64.9 NC_006146.1 + 27187 0.69 0.394532
Target:  5'- gCCCUCCagGCcCUCCGaGGCCccAGGCCu -3'
miRNA:   3'- gGGGAGG--UGaGGGGC-CCGGa-UCCGGc -5'
28752 5' -64.9 NC_006146.1 + 81750 0.69 0.378285
Target:  5'- gCCCUuacaggaUCCAC-CCCCGGGCUUccgggAGGCa- -3'
miRNA:   3'- -GGGG-------AGGUGaGGGGCCCGGA-----UCCGgc -5'
28752 5' -64.9 NC_006146.1 + 99452 0.69 0.386739
Target:  5'- gCCCU-CGCUCCUCGGcGCCaGGuGCCa -3'
miRNA:   3'- gGGGAgGUGAGGGGCC-CGGaUC-CGGc -5'
28752 5' -64.9 NC_006146.1 + 156892 0.69 0.393749
Target:  5'- gCCCUCCGCcuUCCagcaccagcccggCCGaGGCCUGGGUgGc -3'
miRNA:   3'- gGGGAGGUG--AGG-------------GGC-CCGGAUCCGgC- -5'
28752 5' -64.9 NC_006146.1 + 128245 0.69 0.394532
Target:  5'- gCUCUUCCGCUaCCuCUGGGCCcacuacgugAGGCCc -3'
miRNA:   3'- -GGGGAGGUGA-GG-GGCCCGGa--------UCCGGc -5'
28752 5' -64.9 NC_006146.1 + 139219 0.69 0.394532
Target:  5'- gUCCC-CCACccuUCCCUGGucCCUGGGCUGu -3'
miRNA:   3'- -GGGGaGGUG---AGGGGCCc-GGAUCCGGC- -5'
28752 5' -64.9 NC_006146.1 + 14876 0.69 0.394532
Target:  5'- gCCCUCCagGCcCUCCGaGGCCccAGGCCu -3'
miRNA:   3'- gGGGAGG--UGaGGGGC-CCGGa-UCCGGc -5'
28752 5' -64.9 NC_006146.1 + 21031 0.69 0.394532
Target:  5'- gCCCUCCagGCcCUCCGaGGCCccAGGCCu -3'
miRNA:   3'- gGGGAGG--UGaGGGGC-CCGGa-UCCGGc -5'
28752 5' -64.9 NC_006146.1 + 24109 0.69 0.394532
Target:  5'- gCCCUCCagGCcCUCCGaGGCCccAGGCCu -3'
miRNA:   3'- gGGGAGG--UGaGGGGC-CCGGa-UCCGGc -5'
28752 5' -64.9 NC_006146.1 + 106666 0.69 0.41042
Target:  5'- gCCCCUCC-CgCCCC-GGCCcAGGCg- -3'
miRNA:   3'- -GGGGAGGuGaGGGGcCCGGaUCCGgc -5'
28752 5' -64.9 NC_006146.1 + 13047 0.69 0.41042
Target:  5'- aUCCUCCGagaCUCCGGGCCccaaggcGGCCGc -3'
miRNA:   3'- gGGGAGGUga-GGGGCCCGGau-----CCGGC- -5'
28752 5' -64.9 NC_006146.1 + 16125 0.69 0.41042
Target:  5'- aUCCUCCGagaCUCCGGGCCccaaggcGGCCGc -3'
miRNA:   3'- gGGGAGGUga-GGGGCCCGGau-----CCGGC- -5'
28752 5' -64.9 NC_006146.1 + 19203 0.69 0.41042
Target:  5'- aUCCUCCGagaCUCCGGGCCccaaggcGGCCGc -3'
miRNA:   3'- gGGGAGGUga-GGGGCCCGGau-----CCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.