Results 81 - 100 of 314 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
28752 | 5' | -64.9 | NC_006146.1 | + | 137059 | 0.71 | 0.305967 |
Target: 5'- gCCCCugggUCCGCUgCCCCGcuccggcgggggguGGCC-GGGCCGc -3' miRNA: 3'- -GGGG----AGGUGA-GGGGC--------------CCGGaUCCGGC- -5' |
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28752 | 5' | -64.9 | NC_006146.1 | + | 136873 | 0.71 | 0.305967 |
Target: 5'- gCCCCugggUCCGCUgCCCCGcuccggcgggggguGGCC-GGGCCGc -3' miRNA: 3'- -GGGG----AGGUGA-GGGGC--------------CCGGaUCCGGC- -5' |
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28752 | 5' | -64.9 | NC_006146.1 | + | 136223 | 0.71 | 0.305967 |
Target: 5'- gCCCCugggUCCGCUgCCCCGcuccggcgggggguGGCC-GGGCCGc -3' miRNA: 3'- -GGGG----AGGUGA-GGGGC--------------CCGGaUCCGGC- -5' |
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28752 | 5' | -64.9 | NC_006146.1 | + | 136780 | 0.71 | 0.305967 |
Target: 5'- gCCCCugggUCCGCUgCCCCGcuccggcgggggguGGCC-GGGCCGc -3' miRNA: 3'- -GGGG----AGGUGA-GGGGC--------------CCGGaUCCGGC- -5' |
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28752 | 5' | -64.9 | NC_006146.1 | + | 136595 | 0.71 | 0.305967 |
Target: 5'- gCCCCugggUCCGCUgCCCCGcuccggcgggggguGGCC-GGGCCGc -3' miRNA: 3'- -GGGG----AGGUGA-GGGGC--------------CCGGaUCCGGC- -5' |
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28752 | 5' | -64.9 | NC_006146.1 | + | 136502 | 0.71 | 0.305967 |
Target: 5'- gCCCCugggUCCGCUgCCCCGcuccggcgggggguGGCC-GGGCCGc -3' miRNA: 3'- -GGGG----AGGUGA-GGGGC--------------CCGGaUCCGGC- -5' |
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28752 | 5' | -64.9 | NC_006146.1 | + | 136409 | 0.71 | 0.305967 |
Target: 5'- gCCCCugggUCCGCUgCCCCGcuccggcgggggguGGCC-GGGCCGc -3' miRNA: 3'- -GGGG----AGGUGA-GGGGC--------------CCGGaUCCGGC- -5' |
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28752 | 5' | -64.9 | NC_006146.1 | + | 135666 | 0.71 | 0.305967 |
Target: 5'- gCCCCugggUCCGCUgCCCCGcuccggcgggggguGGCC-GGGCCGc -3' miRNA: 3'- -GGGG----AGGUGA-GGGGC--------------CCGGaUCCGGC- -5' |
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28752 | 5' | -64.9 | NC_006146.1 | + | 137431 | 0.71 | 0.305967 |
Target: 5'- gCCCCugggUCCGCUgCCCCGcuccggcgggggguGGCC-GGGCCGc -3' miRNA: 3'- -GGGG----AGGUGA-GGGGC--------------CCGGaUCCGGC- -5' |
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28752 | 5' | -64.9 | NC_006146.1 | + | 135944 | 0.71 | 0.305967 |
Target: 5'- gCCCCugggUCCGCUgCCCCGcuccggcgggggguGGCC-GGGCCGc -3' miRNA: 3'- -GGGG----AGGUGA-GGGGC--------------CCGGaUCCGGC- -5' |
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28752 | 5' | -64.9 | NC_006146.1 | + | 136130 | 0.71 | 0.305967 |
Target: 5'- gCCCCugggUCCGCUgCCCCGcuccggcgggggguGGCC-GGGCCGc -3' miRNA: 3'- -GGGG----AGGUGA-GGGGC--------------CCGGaUCCGGC- -5' |
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28752 | 5' | -64.9 | NC_006146.1 | + | 136037 | 0.71 | 0.305967 |
Target: 5'- gCCCCugggUCCGCUgCCCCGcuccggcgggggguGGCC-GGGCCGc -3' miRNA: 3'- -GGGG----AGGUGA-GGGGC--------------CCGGaUCCGGC- -5' |
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28752 | 5' | -64.9 | NC_006146.1 | + | 135851 | 0.71 | 0.305967 |
Target: 5'- gCCCCugggUCCGCUgCCCCGcuccggcgggggguGGCC-GGGCCGc -3' miRNA: 3'- -GGGG----AGGUGA-GGGGC--------------CCGGaUCCGGC- -5' |
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28752 | 5' | -64.9 | NC_006146.1 | + | 135758 | 0.71 | 0.305967 |
Target: 5'- gCCCCugggUCCGCUgCCCCGcuccggcgggggguGGCC-GGGCCGc -3' miRNA: 3'- -GGGG----AGGUGA-GGGGC--------------CCGGaUCCGGC- -5' |
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28752 | 5' | -64.9 | NC_006146.1 | + | 135573 | 0.71 | 0.305967 |
Target: 5'- gCCCCugggUCCGCUgCCCCGcuccggcgggggguGGCC-GGGCCGc -3' miRNA: 3'- -GGGG----AGGUGA-GGGGC--------------CCGGaUCCGGC- -5' |
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28752 | 5' | -64.9 | NC_006146.1 | + | 135480 | 0.71 | 0.305967 |
Target: 5'- gCCCCugggUCCGCUgCCCCGcuccggcgggggguGGCC-GGGCCGc -3' miRNA: 3'- -GGGG----AGGUGA-GGGGC--------------CCGGaUCCGGC- -5' |
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28752 | 5' | -64.9 | NC_006146.1 | + | 135387 | 0.71 | 0.305967 |
Target: 5'- gCCCCugggUCCGCUgCCCCGcuccggcgggggguGGCC-GGGCCGc -3' miRNA: 3'- -GGGG----AGGUGA-GGGGC--------------CCGGaUCCGGC- -5' |
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28752 | 5' | -64.9 | NC_006146.1 | + | 135294 | 0.71 | 0.305967 |
Target: 5'- gCCCCugggUCCGCUgCCCCGcuccggcgggggguGGCC-GGGCCGc -3' miRNA: 3'- -GGGG----AGGUGA-GGGGC--------------CCGGaUCCGGC- -5' |
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28752 | 5' | -64.9 | NC_006146.1 | + | 135201 | 0.71 | 0.305967 |
Target: 5'- gCCCCugggUCCGCUgCCCCGcuccggcgggggguGGCC-GGGCCGc -3' miRNA: 3'- -GGGG----AGGUGA-GGGGC--------------CCGGaUCCGGC- -5' |
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28752 | 5' | -64.9 | NC_006146.1 | + | 136316 | 0.71 | 0.305967 |
Target: 5'- gCCCCugggUCCGCUgCCCCGcuccggcgggggguGGCC-GGGCCGc -3' miRNA: 3'- -GGGG----AGGUGA-GGGGC--------------CCGGaUCCGGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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