miRNA display CGI


Results 101 - 120 of 314 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28752 5' -64.9 NC_006146.1 + 136223 0.71 0.305967
Target:  5'- gCCCCugggUCCGCUgCCCCGcuccggcgggggguGGCC-GGGCCGc -3'
miRNA:   3'- -GGGG----AGGUGA-GGGGC--------------CCGGaUCCGGC- -5'
28752 5' -64.9 NC_006146.1 + 136842 0.71 0.307935
Target:  5'- gCCCCgugCCACgggaCCCCcGGCCggcaUAGGCCc -3'
miRNA:   3'- -GGGGa--GGUGa---GGGGcCCGG----AUCCGGc -5'
28752 5' -64.9 NC_006146.1 + 115640 0.71 0.307935
Target:  5'- gCCCCacgagCCGCUUcgCCCGGGCCgcccGGGCg- -3'
miRNA:   3'- -GGGGa----GGUGAG--GGGCCCGGa---UCCGgc -5'
28752 5' -64.9 NC_006146.1 + 4034 0.71 0.307935
Target:  5'- gCCCUCCGCUCCCCccucccGCC-GGGCUu -3'
miRNA:   3'- gGGGAGGUGAGGGGcc----CGGaUCCGGc -5'
28752 5' -64.9 NC_006146.1 + 170035 0.71 0.307935
Target:  5'- cUCCCgcggCCAgUCCCUggaugucggggaGGGCCcgGGGCCGc -3'
miRNA:   3'- -GGGGa---GGUgAGGGG------------CCCGGa-UCCGGC- -5'
28752 5' -64.9 NC_006146.1 + 167239 0.71 0.307935
Target:  5'- cUCCCgcggCCAgUCCCUggaugucggggaGGGCCcgGGGCCGc -3'
miRNA:   3'- -GGGGa---GGUgAGGGG------------CCCGGa-UCCGGC- -5'
28752 5' -64.9 NC_006146.1 + 169103 0.71 0.307935
Target:  5'- cUCCCgcggCCAgUCCCUggaugucggggaGGGCCcgGGGCCGc -3'
miRNA:   3'- -GGGGa---GGUgAGGGG------------CCCGGa-UCCGGC- -5'
28752 5' -64.9 NC_006146.1 + 168171 0.71 0.307935
Target:  5'- cUCCCgcggCCAgUCCCUggaugucggggaGGGCCcgGGGCCGc -3'
miRNA:   3'- -GGGGa---GGUgAGGGG------------CCCGGa-UCCGGC- -5'
28752 5' -64.9 NC_006146.1 + 129040 0.71 0.314565
Target:  5'- aCCUCUUCACgaggCCCCGGuaGCCccuGGCCa -3'
miRNA:   3'- -GGGGAGGUGa---GGGGCC--CGGau-CCGGc -5'
28752 5' -64.9 NC_006146.1 + 117715 0.71 0.314565
Target:  5'- gCCCC-CCAaggCCgGGGCCgAGGCCGa -3'
miRNA:   3'- -GGGGaGGUgagGGgCCCGGaUCCGGC- -5'
28752 5' -64.9 NC_006146.1 + 159873 0.71 0.314565
Target:  5'- -aCCUCCcugguCUCCUCgcagaGGGCCUcgAGGCCGg -3'
miRNA:   3'- ggGGAGGu----GAGGGG-----CCCGGA--UCCGGC- -5'
28752 5' -64.9 NC_006146.1 + 156989 0.71 0.31927
Target:  5'- aCCCgCCACUCCUuccaaaaagucacgCGcGGCCUcGGCCGu -3'
miRNA:   3'- gGGGaGGUGAGGG--------------GC-CCGGAuCCGGC- -5'
28752 5' -64.9 NC_006146.1 + 13416 0.71 0.321303
Target:  5'- -aCCUCagggugcCUCCCCGGGuCCcAGGCCa -3'
miRNA:   3'- ggGGAGgu-----GAGGGGCCC-GGaUCCGGc -5'
28752 5' -64.9 NC_006146.1 + 22650 0.71 0.321303
Target:  5'- -aCCUCagggugcCUCCCCGGGuCCcAGGCCa -3'
miRNA:   3'- ggGGAGgu-----GAGGGGCCC-GGaUCCGGc -5'
28752 5' -64.9 NC_006146.1 + 28806 0.71 0.321303
Target:  5'- -aCCUCagggugcCUCCCCGGGuCCcAGGCCa -3'
miRNA:   3'- ggGGAGgu-----GAGGGGCCC-GGaUCCGGc -5'
28752 5' -64.9 NC_006146.1 + 51640 0.71 0.321303
Target:  5'- uCCaggCUCUggACUCCCaggGGGCCaGGGCCGg -3'
miRNA:   3'- -GGg--GAGG--UGAGGGg--CCCGGaUCCGGC- -5'
28752 5' -64.9 NC_006146.1 + 16494 0.71 0.321303
Target:  5'- -aCCUCagggugcCUCCCCGGGuCCcAGGCCa -3'
miRNA:   3'- ggGGAGgu-----GAGGGGCCC-GGaUCCGGc -5'
28752 5' -64.9 NC_006146.1 + 25728 0.71 0.321303
Target:  5'- -aCCUCagggugcCUCCCCGGGuCCcAGGCCa -3'
miRNA:   3'- ggGGAGgu-----GAGGGGCCC-GGaUCCGGc -5'
28752 5' -64.9 NC_006146.1 + 19572 0.71 0.321303
Target:  5'- -aCCUCagggugcCUCCCCGGGuCCcAGGCCa -3'
miRNA:   3'- ggGGAGgu-----GAGGGGCCC-GGaUCCGGc -5'
28752 5' -64.9 NC_006146.1 + 63803 0.71 0.324028
Target:  5'- gCCCCUucccagacccacCCACUCCCCcGGCCUucauuuucucuccuGGCUGc -3'
miRNA:   3'- -GGGGA------------GGUGAGGGGcCCGGAu-------------CCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.