miRNA display CGI


Results 121 - 140 of 314 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28752 5' -64.9 NC_006146.1 + 127705 0.7 0.328148
Target:  5'- gCCCCaUCCccgcCUCCCgcgaggagcugaUGGGgCUGGGCCGg -3'
miRNA:   3'- -GGGG-AGGu---GAGGG------------GCCCgGAUCCGGC- -5'
28752 5' -64.9 NC_006146.1 + 117561 0.7 0.335101
Target:  5'- -aCCUCaCGCcgCCCCGcGGCCgccGGGCCu -3'
miRNA:   3'- ggGGAG-GUGa-GGGGC-CCGGa--UCCGGc -5'
28752 5' -64.9 NC_006146.1 + 29421 0.7 0.335101
Target:  5'- gCCCCgUCCACccugUCCCCcgcaGGCC-AGGCCc -3'
miRNA:   3'- -GGGG-AGGUG----AGGGGc---CCGGaUCCGGc -5'
28752 5' -64.9 NC_006146.1 + 26343 0.7 0.335101
Target:  5'- gCCCCgUCCACccugUCCCCcgcaGGCC-AGGCCc -3'
miRNA:   3'- -GGGG-AGGUG----AGGGGc---CCGGaUCCGGc -5'
28752 5' -64.9 NC_006146.1 + 23265 0.7 0.335101
Target:  5'- gCCCCgUCCACccugUCCCCcgcaGGCC-AGGCCc -3'
miRNA:   3'- -GGGG-AGGUG----AGGGGc---CCGGaUCCGGc -5'
28752 5' -64.9 NC_006146.1 + 20187 0.7 0.335101
Target:  5'- gCCCCgUCCACccugUCCCCcgcaGGCC-AGGCCc -3'
miRNA:   3'- -GGGG-AGGUG----AGGGGc---CCGGaUCCGGc -5'
28752 5' -64.9 NC_006146.1 + 14031 0.7 0.335101
Target:  5'- gCCCCgUCCACccugUCCCCcgcaGGCC-AGGCCc -3'
miRNA:   3'- -GGGG-AGGUG----AGGGGc---CCGGaUCCGGc -5'
28752 5' -64.9 NC_006146.1 + 17109 0.7 0.335101
Target:  5'- gCCCCgUCCACccugUCCCCcgcaGGCC-AGGCCc -3'
miRNA:   3'- -GGGG-AGGUG----AGGGGc---CCGGaUCCGGc -5'
28752 5' -64.9 NC_006146.1 + 122701 0.7 0.335101
Target:  5'- gCCCUCCAgUCCCCGGauGCCaa-GUCGg -3'
miRNA:   3'- gGGGAGGUgAGGGGCC--CGGaucCGGC- -5'
28752 5' -64.9 NC_006146.1 + 14387 0.7 0.34216
Target:  5'- gCCUC-CCGCUCCCCuccGGGCCgcguacGCCGu -3'
miRNA:   3'- -GGGGaGGUGAGGGG---CCCGGauc---CGGC- -5'
28752 5' -64.9 NC_006146.1 + 71854 0.7 0.34216
Target:  5'- aCCCCgaCAC-CCgCCGGGCCcugggGGGCCu -3'
miRNA:   3'- -GGGGagGUGaGG-GGCCCGGa----UCCGGc -5'
28752 5' -64.9 NC_006146.1 + 78836 0.7 0.34216
Target:  5'- gCCCC-CCGCagcagCCCCaGGCC-GGGCCc -3'
miRNA:   3'- -GGGGaGGUGa----GGGGcCCGGaUCCGGc -5'
28752 5' -64.9 NC_006146.1 + 73540 0.7 0.347885
Target:  5'- gCCaggCUCCggaGCUCCCCGGGCgggugguuguGGCCGg -3'
miRNA:   3'- -GGg--GAGG---UGAGGGGCCCGgau-------CCGGC- -5'
28752 5' -64.9 NC_006146.1 + 44580 0.7 0.349327
Target:  5'- uUCCUCCugGC-CCCCGGGCCgcuGCCu -3'
miRNA:   3'- gGGGAGG--UGaGGGGCCCGGaucCGGc -5'
28752 5' -64.9 NC_006146.1 + 135725 0.7 0.356599
Target:  5'- gCCCgUCCuggagCUCgGGGCCggGGGCCGg -3'
miRNA:   3'- -GGGgAGGuga--GGGgCCCGGa-UCCGGC- -5'
28752 5' -64.9 NC_006146.1 + 124181 0.7 0.356599
Target:  5'- -gCCUCCGCccgCCUCGGaGCCgccgcGGCCGa -3'
miRNA:   3'- ggGGAGGUGa--GGGGCC-CGGau---CCGGC- -5'
28752 5' -64.9 NC_006146.1 + 4585 0.7 0.356599
Target:  5'- cCCCCaUCCGCUCUCUGaGCCUAGaCCc -3'
miRNA:   3'- -GGGG-AGGUGAGGGGCcCGGAUCcGGc -5'
28752 5' -64.9 NC_006146.1 + 20946 0.7 0.356599
Target:  5'- gCCC-CCACUCCCac-GCCUGGGCg- -3'
miRNA:   3'- gGGGaGGUGAGGGgccCGGAUCCGgc -5'
28752 5' -64.9 NC_006146.1 + 106180 0.7 0.363235
Target:  5'- uCCCCggccugcugaCACgggUCCCGGGCCUccugccaGGGCCu -3'
miRNA:   3'- -GGGGag--------GUGa--GGGGCCCGGA-------UCCGGc -5'
28752 5' -64.9 NC_006146.1 + 126523 0.7 0.363978
Target:  5'- gCCCCacaCGCcCCCCGGGCggGGGUCu -3'
miRNA:   3'- -GGGGag-GUGaGGGGCCCGgaUCCGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.