Results 141 - 160 of 314 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
28752 | 5' | -64.9 | NC_006146.1 | + | 81750 | 0.69 | 0.378285 |
Target: 5'- gCCCUuacaggaUCCAC-CCCCGGGCUUccgggAGGCa- -3' miRNA: 3'- -GGGG-------AGGUGaGGGGCCCGGA-----UCCGgc -5' |
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28752 | 5' | -64.9 | NC_006146.1 | + | 547 | 0.69 | 0.379049 |
Target: 5'- gCCUCUCCGCgggccUCCacaCGuGGCCUcccaggagagGGGCCGg -3' miRNA: 3'- -GGGGAGGUG-----AGGg--GC-CCGGA----------UCCGGC- -5' |
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28752 | 5' | -64.9 | NC_006146.1 | + | 1478 | 0.69 | 0.379049 |
Target: 5'- gCCUCUCCGCgggccUCCacaCGuGGCCUcccaggagagGGGCCGg -3' miRNA: 3'- -GGGGAGGUG-----AGGg--GC-CCGGA----------UCCGGC- -5' |
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28752 | 5' | -64.9 | NC_006146.1 | + | 2410 | 0.69 | 0.379049 |
Target: 5'- gCCUCUCCGCgggccUCCacaCGuGGCCUcccaggagagGGGCCGg -3' miRNA: 3'- -GGGGAGGUG-----AGGg--GC-CCGGA----------UCCGGC- -5' |
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28752 | 5' | -64.9 | NC_006146.1 | + | 3342 | 0.69 | 0.379049 |
Target: 5'- gCCUCUCCGCgggccUCCacaCGuGGCCUcccaggagagGGGCCGg -3' miRNA: 3'- -GGGGAGGUG-----AGGg--GC-CCGGA----------UCCGGC- -5' |
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28752 | 5' | -64.9 | NC_006146.1 | + | 123243 | 0.69 | 0.379049 |
Target: 5'- aCCCUggCCGCcgCgCUGGGCC-GGGCCGc -3' miRNA: 3'- -GGGGa-GGUGa-GgGGCCCGGaUCCGGC- -5' |
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28752 | 5' | -64.9 | NC_006146.1 | + | 99452 | 0.69 | 0.386739 |
Target: 5'- gCCCU-CGCUCCUCGGcGCCaGGuGCCa -3' miRNA: 3'- gGGGAgGUGAGGGGCC-CGGaUC-CGGc -5' |
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28752 | 5' | -64.9 | NC_006146.1 | + | 156892 | 0.69 | 0.393749 |
Target: 5'- gCCCUCCGCcuUCCagcaccagcccggCCGaGGCCUGGGUgGc -3' miRNA: 3'- gGGGAGGUG--AGG-------------GGC-CCGGAUCCGgC- -5' |
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28752 | 5' | -64.9 | NC_006146.1 | + | 128245 | 0.69 | 0.394532 |
Target: 5'- gCUCUUCCGCUaCCuCUGGGCCcacuacgugAGGCCc -3' miRNA: 3'- -GGGGAGGUGA-GG-GGCCCGGa--------UCCGGc -5' |
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28752 | 5' | -64.9 | NC_006146.1 | + | 139219 | 0.69 | 0.394532 |
Target: 5'- gUCCC-CCACccuUCCCUGGucCCUGGGCUGu -3' miRNA: 3'- -GGGGaGGUG---AGGGGCCc-GGAUCCGGC- -5' |
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28752 | 5' | -64.9 | NC_006146.1 | + | 14876 | 0.69 | 0.394532 |
Target: 5'- gCCCUCCagGCcCUCCGaGGCCccAGGCCu -3' miRNA: 3'- gGGGAGG--UGaGGGGC-CCGGa-UCCGGc -5' |
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28752 | 5' | -64.9 | NC_006146.1 | + | 27187 | 0.69 | 0.394532 |
Target: 5'- gCCCUCCagGCcCUCCGaGGCCccAGGCCu -3' miRNA: 3'- gGGGAGG--UGaGGGGC-CCGGa-UCCGGc -5' |
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28752 | 5' | -64.9 | NC_006146.1 | + | 21031 | 0.69 | 0.394532 |
Target: 5'- gCCCUCCagGCcCUCCGaGGCCccAGGCCu -3' miRNA: 3'- gGGGAGG--UGaGGGGC-CCGGa-UCCGGc -5' |
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28752 | 5' | -64.9 | NC_006146.1 | + | 24109 | 0.69 | 0.394532 |
Target: 5'- gCCCUCCagGCcCUCCGaGGCCccAGGCCu -3' miRNA: 3'- gGGGAGG--UGaGGGGC-CCGGa-UCCGGc -5' |
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28752 | 5' | -64.9 | NC_006146.1 | + | 109948 | 0.69 | 0.402426 |
Target: 5'- aCCCC-CCAC-CCCCGGGCCUc----- -3' miRNA: 3'- -GGGGaGGUGaGGGGCCCGGAuccggc -5' |
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28752 | 5' | -64.9 | NC_006146.1 | + | 106666 | 0.69 | 0.41042 |
Target: 5'- gCCCCUCC-CgCCCC-GGCCcAGGCg- -3' miRNA: 3'- -GGGGAGGuGaGGGGcCCGGaUCCGgc -5' |
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28752 | 5' | -64.9 | NC_006146.1 | + | 13047 | 0.69 | 0.41042 |
Target: 5'- aUCCUCCGagaCUCCGGGCCccaaggcGGCCGc -3' miRNA: 3'- gGGGAGGUga-GGGGCCCGGau-----CCGGC- -5' |
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28752 | 5' | -64.9 | NC_006146.1 | + | 19203 | 0.69 | 0.41042 |
Target: 5'- aUCCUCCGagaCUCCGGGCCccaaggcGGCCGc -3' miRNA: 3'- gGGGAGGUga-GGGGCCCGGau-----CCGGC- -5' |
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28752 | 5' | -64.9 | NC_006146.1 | + | 22281 | 0.69 | 0.41042 |
Target: 5'- aUCCUCCGagaCUCCGGGCCccaaggcGGCCGc -3' miRNA: 3'- gGGGAGGUga-GGGGCCCGGau-----CCGGC- -5' |
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28752 | 5' | -64.9 | NC_006146.1 | + | 16125 | 0.69 | 0.41042 |
Target: 5'- aUCCUCCGagaCUCCGGGCCccaaggcGGCCGc -3' miRNA: 3'- gGGGAGGUga-GGGGCCCGGau-----CCGGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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