miRNA display CGI


Results 101 - 120 of 314 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28752 5' -64.9 NC_006146.1 + 136748 0.67 0.504344
Target:  5'- aCCCC-CCACccUCgCCGGGgCUccgggAGGCCc -3'
miRNA:   3'- -GGGGaGGUG--AGgGGCCCgGA-----UCCGGc -5'
28752 5' -64.9 NC_006146.1 + 47190 0.67 0.504344
Target:  5'- gCCCgCCGCcgCCCCGaGcGCC-AGGCCc -3'
miRNA:   3'- gGGGaGGUGa-GGGGC-C-CGGaUCCGGc -5'
28752 5' -64.9 NC_006146.1 + 44415 0.67 0.502549
Target:  5'- gCCUUCCucgagggGCUCCCgGGGUCUGGcacccguGCCa -3'
miRNA:   3'- gGGGAGG-------UGAGGGgCCCGGAUC-------CGGc -5'
28752 5' -64.9 NC_006146.1 + 136688 0.67 0.501653
Target:  5'- gCCCCugggUCCGCUgCCCCGcuccggcgggggguGGCC--GGCCGc -3'
miRNA:   3'- -GGGG----AGGUGA-GGGGC--------------CCGGauCCGGC- -5'
28752 5' -64.9 NC_006146.1 + 118551 0.67 0.498967
Target:  5'- aCCC-CCACUgccaaaaggacgccgCCCCGGGCaccccGGCCc -3'
miRNA:   3'- gGGGaGGUGA---------------GGGGCCCGgau--CCGGc -5'
28752 5' -64.9 NC_006146.1 + 153950 0.67 0.495397
Target:  5'- gCCCgCCGCUCCCCguuGGGCacGGuGCCu -3'
miRNA:   3'- gGGGaGGUGAGGGG---CCCGgaUC-CGGc -5'
28752 5' -64.9 NC_006146.1 + 42017 0.67 0.495397
Target:  5'- -gCCgagCUACUCCCUcuGGGCCcGGGCUc -3'
miRNA:   3'- ggGGa--GGUGAGGGG--CCCGGaUCCGGc -5'
28752 5' -64.9 NC_006146.1 + 137571 0.67 0.495397
Target:  5'- gCCgggUCCGCUgCCCgguccuggagcuCGGGCCggGGGCCGg -3'
miRNA:   3'- gGGg--AGGUGA-GGG------------GCCCGGa-UCCGGC- -5'
28752 5' -64.9 NC_006146.1 + 119737 0.67 0.495397
Target:  5'- cCCCUUCCACaCCCacagCGGcGCCUcuGCCGc -3'
miRNA:   3'- -GGGGAGGUGaGGG----GCC-CGGAucCGGC- -5'
28752 5' -64.9 NC_006146.1 + 33026 0.67 0.495397
Target:  5'- cCCCCUgCCGg-CCCgGGGCg-GGGCCc -3'
miRNA:   3'- -GGGGA-GGUgaGGGgCCCGgaUCCGGc -5'
28752 5' -64.9 NC_006146.1 + 103671 0.67 0.486523
Target:  5'- -gCCUCCgugGCUUCCUGuGCCU-GGCCGg -3'
miRNA:   3'- ggGGAGG---UGAGGGGCcCGGAuCCGGC- -5'
28752 5' -64.9 NC_006146.1 + 33193 0.67 0.486523
Target:  5'- gCCCgggCAC-CCCCGGGgggAGGCCGg -3'
miRNA:   3'- gGGGag-GUGaGGGGCCCggaUCCGGC- -5'
28752 5' -64.9 NC_006146.1 + 168131 0.67 0.486523
Target:  5'- gUCUUCC-CUgacaUCCGGGCUUGGGCCu -3'
miRNA:   3'- gGGGAGGuGAg---GGGCCCGGAUCCGGc -5'
28752 5' -64.9 NC_006146.1 + 162379 0.67 0.486523
Target:  5'- gCCCCUUgGCgcgcccgCgCCCGGGaCCccggUGGGCCa -3'
miRNA:   3'- -GGGGAGgUGa------G-GGGCCC-GG----AUCCGGc -5'
28752 5' -64.9 NC_006146.1 + 55364 0.67 0.486523
Target:  5'- cCCCCgccaCCGCgcgcgggacgCCCgGGGCaccgAGGCCa -3'
miRNA:   3'- -GGGGa---GGUGa---------GGGgCCCGga--UCCGGc -5'
28752 5' -64.9 NC_006146.1 + 13979 0.67 0.477725
Target:  5'- gCCCgucagcgCCGC-CaCCCaGGCCUcGGCCGg -3'
miRNA:   3'- gGGGa------GGUGaG-GGGcCCGGAuCCGGC- -5'
28752 5' -64.9 NC_006146.1 + 47750 0.67 0.477725
Target:  5'- cCUCCUCgCGCgCCCUGgcgaguacGGCCUccaGGGCCGu -3'
miRNA:   3'- -GGGGAG-GUGaGGGGC--------CCGGA---UCCGGC- -5'
28752 5' -64.9 NC_006146.1 + 23933 0.67 0.47685
Target:  5'- gCCCCUCCugccccaagggcgGCgacuuuccCCCCGGGUCgggugggGGaGCCGg -3'
miRNA:   3'- -GGGGAGG-------------UGa-------GGGGCCCGGa------UC-CGGC- -5'
28752 5' -64.9 NC_006146.1 + 98895 0.68 0.469006
Target:  5'- cCCCCgCUACUCaCCCGcGCCaGGGUCu -3'
miRNA:   3'- -GGGGaGGUGAG-GGGCcCGGaUCCGGc -5'
28752 5' -64.9 NC_006146.1 + 127321 0.68 0.469006
Target:  5'- cUCCCgccCCGCUCCCCGGGaacgCUcAGuacGCCGu -3'
miRNA:   3'- -GGGGa--GGUGAGGGGCCCg---GA-UC---CGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.