Results 121 - 140 of 314 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
28752 | 5' | -64.9 | NC_006146.1 | + | 142122 | 0.68 | 0.46037 |
Target: 5'- gCUCCUCCG-UCCUCuggacuagGGGcCCUGGGCCc -3' miRNA: 3'- -GGGGAGGUgAGGGG--------CCC-GGAUCCGGc -5' |
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28752 | 5' | -64.9 | NC_006146.1 | + | 145200 | 0.68 | 0.46037 |
Target: 5'- gCUCCUCCG-UCCUCuggacuagGGGcCCUGGGCCc -3' miRNA: 3'- -GGGGAGGUgAGGGG--------CCC-GGAUCCGGc -5' |
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28752 | 5' | -64.9 | NC_006146.1 | + | 147437 | 0.68 | 0.46037 |
Target: 5'- aCCUggCCACggCCaGGGCCUcguAGGCCGa -3' miRNA: 3'- gGGGa-GGUGagGGgCCCGGA---UCCGGC- -5' |
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28752 | 5' | -64.9 | NC_006146.1 | + | 148278 | 0.68 | 0.46037 |
Target: 5'- gCUCCUCCG-UCCUCuggacuagGGGcCCUGGGCCc -3' miRNA: 3'- -GGGGAGGUgAGGGG--------CCC-GGAUCCGGc -5' |
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28752 | 5' | -64.9 | NC_006146.1 | + | 73035 | 0.68 | 0.46037 |
Target: 5'- gCCCUcguUCCACggCCCgGGGUCggcGGCCc -3' miRNA: 3'- -GGGG---AGGUGa-GGGgCCCGGau-CCGGc -5' |
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28752 | 5' | -64.9 | NC_006146.1 | + | 157512 | 0.68 | 0.46037 |
Target: 5'- gCUCCUCCG-UCCUCuggacuagGGGcCCUGGGCCc -3' miRNA: 3'- -GGGGAGGUgAGGGG--------CCC-GGAUCCGGc -5' |
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28752 | 5' | -64.9 | NC_006146.1 | + | 151356 | 0.68 | 0.46037 |
Target: 5'- gCUCCUCCG-UCCUCuggacuagGGGcCCUGGGCCc -3' miRNA: 3'- -GGGGAGGUgAGGGG--------CCC-GGAUCCGGc -5' |
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28752 | 5' | -64.9 | NC_006146.1 | + | 154434 | 0.68 | 0.46037 |
Target: 5'- gCUCCUCCG-UCCUCuggacuagGGGcCCUGGGCCc -3' miRNA: 3'- -GGGGAGGUgAGGGG--------CCC-GGAUCCGGc -5' |
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28752 | 5' | -64.9 | NC_006146.1 | + | 4205 | 0.68 | 0.451818 |
Target: 5'- cCCCCUCCcauugccccguCUCCCCccuGCC-AGGCCa -3' miRNA: 3'- -GGGGAGGu----------GAGGGGcc-CGGaUCCGGc -5' |
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28752 | 5' | -64.9 | NC_006146.1 | + | 215 | 0.68 | 0.451818 |
Target: 5'- cCCCCgcgaCGgUCCCCGGGgCgccccuGGCCu -3' miRNA: 3'- -GGGGag--GUgAGGGGCCCgGau----CCGGc -5' |
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28752 | 5' | -64.9 | NC_006146.1 | + | 42041 | 0.68 | 0.451818 |
Target: 5'- cCCCCUCUucguggccCUUCCUGuGCCU-GGCCGg -3' miRNA: 3'- -GGGGAGGu-------GAGGGGCcCGGAuCCGGC- -5' |
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28752 | 5' | -64.9 | NC_006146.1 | + | 131062 | 0.68 | 0.451818 |
Target: 5'- cCCCCgccggcCCACUgugcggccgaggCCgCCGGGCCgucaacGGCCGc -3' miRNA: 3'- -GGGGa-----GGUGA------------GG-GGCCCGGau----CCGGC- -5' |
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28752 | 5' | -64.9 | NC_006146.1 | + | 53301 | 0.68 | 0.451818 |
Target: 5'- uCUCCUCCuCUCCCUGGccggaguccgaGCCcgaggAGGCCc -3' miRNA: 3'- -GGGGAGGuGAGGGGCC-----------CGGa----UCCGGc -5' |
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28752 | 5' | -64.9 | NC_006146.1 | + | 117100 | 0.68 | 0.450967 |
Target: 5'- gCCCC-CCGCUauggacgCCgCgCGGGCCgAGGCCc -3' miRNA: 3'- -GGGGaGGUGA-------GG-G-GCCCGGaUCCGGc -5' |
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28752 | 5' | -64.9 | NC_006146.1 | + | 54786 | 0.68 | 0.449269 |
Target: 5'- cCCCUUCCACUuguuuuacggggacCCUCGGGU---GGCCGc -3' miRNA: 3'- -GGGGAGGUGA--------------GGGGCCCGgauCCGGC- -5' |
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28752 | 5' | -64.9 | NC_006146.1 | + | 93604 | 0.68 | 0.446729 |
Target: 5'- aCCCgCCggGCUCCUgGGGCUgcuguccuccccggAGGCCGa -3' miRNA: 3'- gGGGaGG--UGAGGGgCCCGGa-------------UCCGGC- -5' |
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28752 | 5' | -64.9 | NC_006146.1 | + | 116182 | 0.68 | 0.443354 |
Target: 5'- uCCCCUCgGCcgcccugaCCCGGGCCc--GCCGu -3' miRNA: 3'- -GGGGAGgUGag------GGGCCCGGaucCGGC- -5' |
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28752 | 5' | -64.9 | NC_006146.1 | + | 41828 | 0.68 | 0.443354 |
Target: 5'- cCCCUUUCugUgaaaacaCCCGGGCCguGGCCa -3' miRNA: 3'- -GGGGAGGugAg------GGGCCCGGauCCGGc -5' |
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28752 | 5' | -64.9 | NC_006146.1 | + | 43163 | 0.68 | 0.443354 |
Target: 5'- uCUUCUCCagGCUCUCCGGGCCca-GCCc -3' miRNA: 3'- -GGGGAGG--UGAGGGGCCCGGaucCGGc -5' |
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28752 | 5' | -64.9 | NC_006146.1 | + | 4564 | 0.68 | 0.43498 |
Target: 5'- cCCCCagCUAUUCaccgagcaCCCGGGCCUgguuuuugAGGUCGa -3' miRNA: 3'- -GGGGa-GGUGAG--------GGGCCCGGA--------UCCGGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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