Results 81 - 100 of 314 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28752 | 5' | -64.9 | NC_006146.1 | + | 24395 | 0.73 | 0.226185 |
Target: 5'- gCgCCUUCGCUCUCCGGGUUUacguuccaggAGGCCGc -3' miRNA: 3'- -GgGGAGGUGAGGGGCCCGGA----------UCCGGC- -5' |
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28752 | 5' | -64.9 | NC_006146.1 | + | 24655 | 0.77 | 0.122822 |
Target: 5'- uCCCCU-CGC-CCCUGGGCCUcAGGCCc -3' miRNA: 3'- -GGGGAgGUGaGGGGCCCGGA-UCCGGc -5' |
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28752 | 5' | -64.9 | NC_006146.1 | + | 24678 | 0.66 | 0.553751 |
Target: 5'- -nCCUCCGCgUCCCCguccuccagagucacGGGCUacAGGCCc -3' miRNA: 3'- ggGGAGGUG-AGGGG---------------CCCGGa-UCCGGc -5' |
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28752 | 5' | -64.9 | NC_006146.1 | + | 25359 | 0.69 | 0.41042 |
Target: 5'- aUCCUCCGagaCUCCGGGCCccaaggcGGCCGc -3' miRNA: 3'- gGGGAGGUga-GGGGCCCGGau-----CCGGC- -5' |
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28752 | 5' | -64.9 | NC_006146.1 | + | 25728 | 0.71 | 0.321303 |
Target: 5'- -aCCUCagggugcCUCCCCGGGuCCcAGGCCa -3' miRNA: 3'- ggGGAGgu-----GAGGGGCCC-GGaUCCGGc -5' |
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28752 | 5' | -64.9 | NC_006146.1 | + | 25990 | 0.73 | 0.234508 |
Target: 5'- cCCCCUCCACcccagucccccccCCCCGcuuucGGCCUcucggguccaccAGGCCGg -3' miRNA: 3'- -GGGGAGGUGa------------GGGGC-----CCGGA------------UCCGGC- -5' |
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28752 | 5' | -64.9 | NC_006146.1 | + | 26122 | 0.72 | 0.276387 |
Target: 5'- cCCCCUCagcuuguCUCCCCaccGGGUCcaucAGGCCGg -3' miRNA: 3'- -GGGGAGgu-----GAGGGG---CCCGGa---UCCGGC- -5' |
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28752 | 5' | -64.9 | NC_006146.1 | + | 26241 | 0.75 | 0.167491 |
Target: 5'- cCCCCUCCucucuccCUCCCCGaGGCCccGGCUc -3' miRNA: 3'- -GGGGAGGu------GAGGGGC-CCGGauCCGGc -5' |
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28752 | 5' | -64.9 | NC_006146.1 | + | 26343 | 0.7 | 0.335101 |
Target: 5'- gCCCCgUCCACccugUCCCCcgcaGGCC-AGGCCc -3' miRNA: 3'- -GGGG-AGGUG----AGGGGc---CCGGaUCCGGc -5' |
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28752 | 5' | -64.9 | NC_006146.1 | + | 26395 | 0.68 | 0.43498 |
Target: 5'- uCCCCaCCcCUCCCCGGccacCCcAGGCCc -3' miRNA: 3'- -GGGGaGGuGAGGGGCCc---GGaUCCGGc -5' |
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28752 | 5' | -64.9 | NC_006146.1 | + | 26509 | 0.67 | 0.51336 |
Target: 5'- cCCCCUuuGC-CCCCuGGC--AGGCCa -3' miRNA: 3'- -GGGGAggUGaGGGGcCCGgaUCCGGc -5' |
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28752 | 5' | -64.9 | NC_006146.1 | + | 27187 | 0.69 | 0.394532 |
Target: 5'- gCCCUCCagGCcCUCCGaGGCCccAGGCCu -3' miRNA: 3'- gGGGAGG--UGaGGGGC-CCGGa-UCCGGc -5' |
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28752 | 5' | -64.9 | NC_006146.1 | + | 27339 | 0.66 | 0.559337 |
Target: 5'- aCCUUCCAgg-CCCGGGCCcccaggucucGGGCCa -3' miRNA: 3'- gGGGAGGUgagGGGCCCGGa---------UCCGGc -5' |
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28752 | 5' | -64.9 | NC_006146.1 | + | 27597 | 0.67 | 0.52153 |
Target: 5'- gCCUUCCaagacagACUCUCCGGGUCcacuggguGGCCa -3' miRNA: 3'- gGGGAGG-------UGAGGGGCCCGGau------CCGGc -5' |
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28752 | 5' | -64.9 | NC_006146.1 | + | 27733 | 0.77 | 0.122822 |
Target: 5'- uCCCCU-CGC-CCCUGGGCCUcAGGCCc -3' miRNA: 3'- -GGGGAgGUGaGGGGCCCGGA-UCCGGc -5' |
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28752 | 5' | -64.9 | NC_006146.1 | + | 27756 | 0.66 | 0.553751 |
Target: 5'- -nCCUCCGCgUCCCCguccuccagagucacGGGCUacAGGCCc -3' miRNA: 3'- ggGGAGGUG-AGGGG---------------CCCGGa-UCCGGc -5' |
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28752 | 5' | -64.9 | NC_006146.1 | + | 28437 | 0.69 | 0.41042 |
Target: 5'- aUCCUCCGagaCUCCGGGCCccaaggcGGCCGc -3' miRNA: 3'- gGGGAGGUga-GGGGCCCGGau-----CCGGC- -5' |
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28752 | 5' | -64.9 | NC_006146.1 | + | 28806 | 0.71 | 0.321303 |
Target: 5'- -aCCUCagggugcCUCCCCGGGuCCcAGGCCa -3' miRNA: 3'- ggGGAGgu-----GAGGGGCCC-GGaUCCGGc -5' |
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28752 | 5' | -64.9 | NC_006146.1 | + | 29068 | 0.73 | 0.234508 |
Target: 5'- cCCCCUCCACcccagucccccccCCCCGcuuucGGCCUcucggguccaccAGGCCGg -3' miRNA: 3'- -GGGGAGGUGa------------GGGGC-----CCGGA------------UCCGGC- -5' |
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28752 | 5' | -64.9 | NC_006146.1 | + | 29200 | 0.72 | 0.276387 |
Target: 5'- cCCCCUCagcuuguCUCCCCaccGGGUCcaucAGGCCGg -3' miRNA: 3'- -GGGGAGgu-----GAGGGG---CCCGGa---UCCGGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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