miRNA display CGI


Results 101 - 120 of 314 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28752 5' -64.9 NC_006146.1 + 29319 0.75 0.167491
Target:  5'- cCCCCUCCucucuccCUCCCCGaGGCCccGGCUc -3'
miRNA:   3'- -GGGGAGGu------GAGGGGC-CCGGauCCGGc -5'
28752 5' -64.9 NC_006146.1 + 29421 0.7 0.335101
Target:  5'- gCCCCgUCCACccugUCCCCcgcaGGCC-AGGCCc -3'
miRNA:   3'- -GGGG-AGGUG----AGGGGc---CCGGaUCCGGc -5'
28752 5' -64.9 NC_006146.1 + 29473 0.68 0.43498
Target:  5'- uCCCCaCCcCUCCCCGGccacCCcAGGCCc -3'
miRNA:   3'- -GGGGaGGuGAGGGGCCc---GGaUCCGGc -5'
28752 5' -64.9 NC_006146.1 + 29587 0.67 0.51336
Target:  5'- cCCCCUuuGC-CCCCuGGC--AGGCCa -3'
miRNA:   3'- -GGGGAggUGaGGGGcCCGgaUCCGGc -5'
28752 5' -64.9 NC_006146.1 + 30214 0.66 0.587481
Target:  5'- gCCgCUgCGC-CCgCCGGGCU--GGCCGg -3'
miRNA:   3'- -GGgGAgGUGaGG-GGCCCGGauCCGGC- -5'
28752 5' -64.9 NC_006146.1 + 31323 0.66 0.578065
Target:  5'- gCCCC-CCGCagCCUCauuGGGCUUacAGGCCu -3'
miRNA:   3'- -GGGGaGGUGa-GGGG---CCCGGA--UCCGGc -5'
28752 5' -64.9 NC_006146.1 + 31442 0.66 0.550036
Target:  5'- cCUUCUCCAgUgcaggcacccCCCCGGGCaccguggGGGCCu -3'
miRNA:   3'- -GGGGAGGUgA----------GGGGCCCGga-----UCCGGc -5'
28752 5' -64.9 NC_006146.1 + 31828 0.67 0.522441
Target:  5'- gCCCC-CCGCgCCaCCaGGGCCcguaugguGGCCGc -3'
miRNA:   3'- -GGGGaGGUGaGG-GG-CCCGGau------CCGGC- -5'
28752 5' -64.9 NC_006146.1 + 33026 0.67 0.495397
Target:  5'- cCCCCUgCCGg-CCCgGGGCg-GGGCCc -3'
miRNA:   3'- -GGGGA-GGUgaGGGgCCCGgaUCCGGc -5'
28752 5' -64.9 NC_006146.1 + 33193 0.67 0.486523
Target:  5'- gCCCgggCAC-CCCCGGGgggAGGCCGg -3'
miRNA:   3'- gGGGag-GUGaGGGGCCCggaUCCGGC- -5'
28752 5' -64.9 NC_006146.1 + 35299 0.66 0.578065
Target:  5'- gCCCCgggguugCCugUCUuagcacuaacuCCGGGCCUgaagAGGuuGa -3'
miRNA:   3'- -GGGGa------GGugAGG-----------GGCCCGGA----UCCggC- -5'
28752 5' -64.9 NC_006146.1 + 35586 0.72 0.276387
Target:  5'- uCCCCUcagagCCAUUCCCCuGGGUCUguGGGCa- -3'
miRNA:   3'- -GGGGA-----GGUGAGGGG-CCCGGA--UCCGgc -5'
28752 5' -64.9 NC_006146.1 + 38352 0.66 0.550036
Target:  5'- -aUCUCaCGCUCcgaCCCGaGGCCUucgAGGCCa -3'
miRNA:   3'- ggGGAG-GUGAG---GGGC-CCGGA---UCCGGc -5'
28752 5' -64.9 NC_006146.1 + 41044 0.73 0.242001
Target:  5'- cCCCCgUCCGCggcggCCCUggGGGCCUcgggguggagggAGGCCa -3'
miRNA:   3'- -GGGG-AGGUGa----GGGG--CCCGGA------------UCCGGc -5'
28752 5' -64.9 NC_006146.1 + 41322 0.66 0.590311
Target:  5'- gUCCCUCCcuguuucGCgCCCCaaccuaucuggcccaGGGCCUGgcggugguGGCCGu -3'
miRNA:   3'- -GGGGAGG-------UGaGGGG---------------CCCGGAU--------CCGGC- -5'
28752 5' -64.9 NC_006146.1 + 41828 0.68 0.443354
Target:  5'- cCCCUUUCugUgaaaacaCCCGGGCCguGGCCa -3'
miRNA:   3'- -GGGGAGGugAg------GGGCCCGGauCCGGc -5'
28752 5' -64.9 NC_006146.1 + 42017 0.67 0.495397
Target:  5'- -gCCgagCUACUCCCUcuGGGCCcGGGCUc -3'
miRNA:   3'- ggGGa--GGUGAGGGG--CCCGGaUCCGGc -5'
28752 5' -64.9 NC_006146.1 + 42041 0.68 0.451818
Target:  5'- cCCCCUCUucguggccCUUCCUGuGCCU-GGCCGg -3'
miRNA:   3'- -GGGGAGGu-------GAGGGGCcCGGAuCCGGC- -5'
28752 5' -64.9 NC_006146.1 + 42723 0.67 0.531584
Target:  5'- cCCCCUgggCCGCcUCCCGGcgucgcugcaucGCCUgcggcagcaGGGCCGa -3'
miRNA:   3'- -GGGGA---GGUGaGGGGCC------------CGGA---------UCCGGC- -5'
28752 5' -64.9 NC_006146.1 + 42954 0.67 0.531584
Target:  5'- gCCCUCCg--CCCCGGGCac--GCUGa -3'
miRNA:   3'- gGGGAGGugaGGGGCCCGgaucCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.